Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J8M99_RS09350 Genome accession   NZ_CP072742
Coordinates   2036258..2037781 (-) Length   507 a.a.
NCBI ID   WP_094982438.1    Uniprot ID   -
Organism   Serratia fonticola strain R28     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2031258..2042781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8M99_RS09325 (J8M99_09320) ytfR 2031417..2032931 (+) 1515 WP_218520154.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  J8M99_RS09330 (J8M99_09325) ytfT 2032928..2033950 (+) 1023 WP_094982439.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  J8M99_RS09335 (J8M99_09330) yjfF 2033947..2034939 (+) 993 WP_037376500.1 galactofuranose ABC transporter, permease protein YjfF -
  J8M99_RS09340 (J8M99_09335) hdfR 2034944..2035771 (-) 828 WP_021807365.1 HTH-type transcriptional regulator HdfR -
  J8M99_RS09345 (J8M99_09340) - 2035891..2036229 (+) 339 WP_021181829.1 DUF413 domain-containing protein -
  J8M99_RS09350 (J8M99_09345) comM 2036258..2037781 (-) 1524 WP_094982438.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J8M99_RS09355 (J8M99_09350) - 2038125..2039357 (+) 1233 WP_021807367.1 MFS transporter -
  J8M99_RS09360 (J8M99_09355) ilvL 2039491..2039589 (+) 99 WP_071681478.1 ilv operon leader peptide -
  J8M99_RS09365 (J8M99_09360) ilvG 2039731..2041377 (+) 1647 WP_218520155.1 acetolactate synthase 2 catalytic subunit -
  J8M99_RS09370 (J8M99_09365) ilvM 2041374..2041631 (+) 258 WP_021181824.1 acetolactate synthase 2 small subunit -
  J8M99_RS09375 (J8M99_09370) ilvE 2041653..2042579 (+) 927 WP_021181823.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54705.08 Da        Isoelectric Point: 8.9562

>NTDB_id=555350 J8M99_RS09350 WP_094982438.1 2036258..2037781(-) (comM) [Serratia fonticola strain R28]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGELPIAVAPPAAATSTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLAKQRHA
GESSQQVRQRVLVARERQLARAGKVNALLSNREVDRDCHLPAAEAEFLERTLSQLGLSVRAWHRILKVARTLADLTGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=555350 J8M99_RS09350 WP_094982438.1 2036258..2037781(-) (comM) [Serratia fonticola strain R28]
ATGTCACTGGCGGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCACCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTCACGCTGGTCGGTCTACCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCACTGA
TCAACAACGGCTTCACCTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCCGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCGGCCTCAGAACAGTTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTGGCGCTTTCTGGCGCATTGAGGGCGGTGCACGGCGCCATTCCGGCGGCAATAGCGGCTGCCGAGGCCAAAC
GTGAGCTGATCCTCGCAGCGGCCAACGGCAAAGAGGCAGGGTTGCTTCCCAACAGCACGACCCGAGTTGCGGAACATTTG
CTTGAGGTTTGCGCTTTTTTGCAAGGTAAGGGTGAGCTGCCGATCGCCGTAGCGCCCCCTGCGGCCGCCACGTCAACGGA
AACTGCCGACCTGCAGGAAGTCATTGGCCAGGAGCAGGCAAAACGAGCGTTGGAAATTGCCGCGGCCGGGGGCCACAACC
TATTGCTGCTTGGCCCTCCGGGCACCGGAAAAACCATGCTGGCCAGCCGCCTCAACGGTTTGCTGCCGCCGTTAAGCGAT
CGGGAGGCGTTGGAAAGCGTGGCCGTTGCCAGCTTATTGCATCACCCTGATGAAACCCTGCCATGGCGACAGCGGCCGTT
TCGTGCCCCGCATCACAGCGCTTCGATGGCTGCCCTGGTTGGAGGCGGTTCCTTGCCACGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTGCTATTTCTGGATGAGTTACCGGAATTTGAACGGCGAGTATTGGATGCGCTGCGTGAGCCGCTGGAA
TCCGGTGAAATCGTCATCTCACGCGCTAGTGCCAAGGTACGCTTCCCAGCCAGGGTGCAGCTGATTGCAGCGATGAACCC
CAGCCCAACCGGACACTATCAGGGCATACACAACCGCACGCCACCGCAGCAGATTTTGCGCTACCTCGGCAGGCTCTCTG
GCCCCTTCCTCGATCGATTTGATTTGTCGATTGAGGTGCCACTGCTGCCACCAGGCGTACTGGCCAAGCAGCGCCATGCG
GGGGAAAGCAGCCAACAGGTACGTCAAAGGGTGCTGGTGGCGCGCGAGCGGCAGCTGGCACGTGCAGGTAAAGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTACCTGCAGCGGAAGCGGAGTTTTTAGAAAGAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACACTGGCCGATTTGACGGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGTTACACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.206

99.803

0.661
  comM Vibrio cholerae strain A1552

66.534

99.014

0.659
  comM Glaesserella parasuis strain SC1401

64.694

100

0.647
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.078

100

0.464