Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VPBB_RS14940 Genome accession   NC_019955
Coordinates   3229406..3230518 (-) Length   370 a.a.
NCBI ID   WP_015297512.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus BB22OP     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3224406..3235518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS14910 (VPBB_2866) hemF 3224867..3225784 (-) 918 WP_015297508.1 oxygen-dependent coproporphyrinogen oxidase -
  VPBB_RS14915 (VPBB_2867) - 3225832..3226389 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  VPBB_RS14920 (VPBB_2868) purE 3226589..3227074 (+) 486 WP_029825772.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VPBB_RS14925 (VPBB_2869) - 3227079..3228206 (+) 1128 WP_015297510.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VPBB_RS14930 (VPBB_2871) - 3228276..3228845 (-) 570 WP_015297511.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  VPBB_RS14935 (VPBB_2872) - 3228924..3229403 (-) 480 WP_005461440.1 DUF494 family protein -
  VPBB_RS14940 (VPBB_2873) dprA 3229406..3230518 (-) 1113 WP_015297512.1 DNA-processing protein DprA Machinery gene
  VPBB_RS14945 (VPBB_2874) - 3230502..3231596 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  VPBB_RS14950 (VPBB_2875) def 3231735..3232253 (+) 519 WP_005461416.1 peptide deformylase -
  VPBB_RS14955 (VPBB_2876) fmt 3232287..3233234 (+) 948 WP_015297513.1 methionyl-tRNA formyltransferase -
  VPBB_RS14960 (VPBB_2877) rsmB 3233315..3234598 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39987.65 Da        Isoelectric Point: 6.4133

>NTDB_id=55511 VPBB_RS14940 WP_015297512.1 3229406..3230518(-) (dprA) [Vibrio parahaemolyticus BB22OP]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINFSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=55511 VPBB_RS14940 WP_015297512.1 3229406..3230518(-) (dprA) [Vibrio parahaemolyticus BB22OP]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTTCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.273

89.189

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.205

100

0.403
  dprA Neisseria meningitidis MC58

38.205

100

0.403
  dprA Neisseria gonorrhoeae MS11

36.34

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

36.082

100

0.378

Multiple sequence alignment