Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J8Z25_RS16295 Genome accession   NZ_CP072673
Coordinates   3502033..3503544 (-) Length   503 a.a.
NCBI ID   WP_250662046.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. SCSIO 43101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3497033..3508544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Z25_RS16280 (J8Z25_16250) - 3497450..3498514 (-) 1065 WP_130050267.1 hemolysin family protein -
  J8Z25_RS16285 (J8Z25_16255) - 3498659..3501154 (+) 2496 WP_250661421.1 S9 family peptidase -
  J8Z25_RS16290 (J8Z25_16260) - 3501320..3502024 (+) 705 WP_130050265.1 response regulator transcription factor -
  J8Z25_RS16295 (J8Z25_16265) comM 3502033..3503544 (-) 1512 WP_250662046.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J8Z25_RS16300 (J8Z25_16270) - 3503584..3504198 (-) 615 WP_250661422.1 trimeric intracellular cation channel family protein -
  J8Z25_RS16305 (J8Z25_16275) - 3504636..3506051 (-) 1416 WP_250661423.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J8Z25_RS16310 (J8Z25_16280) - 3506117..3506890 (-) 774 WP_130050263.1 amidohydrolase -
  J8Z25_RS16315 (J8Z25_16285) - 3506878..3508020 (-) 1143 WP_284693404.1 methionine aminotransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55235.99 Da        Isoelectric Point: 6.8280

>NTDB_id=554966 J8Z25_RS16295 WP_250662046.1 3502033..3503544(-) (comM) [Pseudoalteromonas sp. SCSIO 43101]
MSLARIFSRAQVGVQAPEVIVEVHLGNGLPAFHIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKEGGR
FDLAIAVGILVASGQINCPDIHRYEFYGELALNGEVRGVNAILPSVLGAKELGRCCFLPAENDNLASLVSGVSRKAVYSL
QDVWNDLLNQQPLPLNISYPEQQSQRDSLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMPTIMPTMS
DDEAISTAALYSIIGQSVDLSNWRERPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGVVTISRAARQMEFPSQFQLIAALNPSPTGSHTDKRATPDQVLRYLSRVSGPFIDRIDLQIELPRLTSSQLQSTQVEE
SSEEVRARVERAYTIQLNRQGKVNARLNNKEMSIHCELAAAELQFLAKASEKLALSPRSYHRVIKVARTISDLKAQPSIT
LNELKEALNYRAFERLISQLTQY

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=554966 J8Z25_RS16295 WP_250662046.1 3502033..3503544(-) (comM) [Pseudoalteromonas sp. SCSIO 43101]
GTGTCTTTAGCTAGAATATTTTCACGTGCACAAGTAGGTGTGCAAGCCCCTGAAGTAATTGTTGAAGTACACCTAGGAAA
TGGCTTGCCAGCTTTTCATATCGTTGGCTTACCAGAGGCATCAGTCAAAGAGTCGAAAGACAGAGTGCGTAGCGCTCTTG
AAAACTCACAGTTTGGTTTTCCCGACCAACGTATAACCGTCAACCTTGCGCCTGCCGATTTGCCTAAAGAGGGTGGTCGT
TTTGATCTGGCTATTGCTGTGGGTATTTTAGTCGCCTCTGGGCAAATAAACTGCCCTGATATACATCGATATGAGTTTTA
CGGAGAGTTGGCTTTAAATGGTGAAGTAAGAGGGGTAAATGCTATTTTGCCATCGGTATTGGGAGCAAAAGAGCTGGGCC
GCTGTTGTTTCTTACCCGCGGAAAACGATAACCTCGCAAGCCTAGTGTCGGGCGTTTCTCGAAAAGCCGTTTACTCCTTA
CAAGATGTCTGGAATGACTTATTAAATCAGCAACCTTTACCACTTAATATTAGCTATCCAGAACAGCAGTCGCAGCGTGA
TTCACTACTCGATTTAAGCGATGTGAAAGGCCAGCCTGGCGCAAAAAGAGTGCTCGAAATTGCTGCCGCTGGTGGCCATA
ATTTGCTGTTTCTTGGTCCTCCAGGTACTGGTAAATCAATGCTTGCCCAGCGTATGCCAACGATTATGCCAACTATGTCC
GATGATGAAGCAATTAGTACTGCCGCGTTATATTCTATTATTGGTCAATCGGTTGATTTATCTAATTGGCGTGAACGCCC
CTTCAGAAACCCTCATCATACTTGCTCTGCAGTTGCCCTAGTCGGTGGTTCTTCGAACCCTAAGCCGGGTGAAATCTCCC
TTGCTCATAATGGCGTACTGTTTCTAGATGAACTGCCCGAATTCGAAAGAAAAGTGCTCGACTCATTGCGCGAACCAATG
GAAACAGGTGTTGTAACAATATCGCGAGCGGCACGACAAATGGAATTTCCATCGCAATTCCAGCTAATCGCCGCATTAAA
CCCTAGCCCCACAGGAAGTCATACCGATAAACGTGCAACACCAGATCAAGTTCTGCGGTACTTATCTCGGGTGTCTGGGC
CATTTATCGATAGGATTGATTTACAAATTGAGCTGCCGCGACTTACCAGTAGCCAATTACAGAGCACGCAAGTGGAAGAG
AGTAGTGAAGAGGTGAGAGCCAGAGTCGAAAGAGCCTATACAATTCAGCTTAACCGACAAGGCAAAGTGAATGCGCGCTT
GAATAATAAAGAAATGAGCATTCATTGTGAGTTGGCAGCTGCTGAGCTGCAGTTTTTAGCAAAAGCCAGTGAAAAACTGG
CACTTTCACCGCGCTCATATCATCGTGTTATTAAAGTTGCGCGTACCATTAGCGACTTAAAAGCGCAGCCTTCAATTACC
TTAAACGAACTAAAAGAGGCGTTGAATTATCGCGCCTTTGAAAGGTTAATTAGCCAATTAACGCAGTATTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.151

100

0.563
  comM Glaesserella parasuis strain SC1401

54.15

100

0.545
  comM Haemophilus influenzae Rd KW20

54.043

100

0.545
  comM Vibrio campbellii strain DS40M4

53.77

100

0.539
  comM Legionella pneumophila str. Paris

49.098

99.205

0.487
  comM Legionella pneumophila strain ERS1305867

49.098

99.205

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.564

100

0.437