Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0F67_RS09985 Genome accession   NZ_CP090556
Coordinates   2041868..2042404 (+) Length   178 a.a.
NCBI ID   WP_014991634.1    Uniprot ID   A0ABT1WQZ5
Organism   Actinobacillus suis strain D20_277     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2036868..2047404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS09970 (L0F67_09955) - 2038228..2038512 (+) 285 WP_014991631.1 hypothetical protein -
  L0F67_RS09975 (L0F67_09960) - 2038521..2038814 (+) 294 WP_014991632.1 hypothetical protein -
  L0F67_RS09980 (L0F67_09965) uvrA 2038888..2041716 (-) 2829 WP_014991633.1 excinuclease ABC subunit UvrA Machinery gene
  L0F67_RS09985 (L0F67_09970) ssb 2041868..2042404 (+) 537 WP_014991634.1 single-stranded DNA-binding protein Machinery gene
  L0F67_RS09990 (L0F67_09975) - 2042593..2042904 (+) 312 WP_014991635.1 helix-turn-helix transcriptional regulator -
  L0F67_RS09995 (L0F67_09980) - 2042983..2043669 (+) 687 WP_014991636.1 DsbA family oxidoreductase -
  L0F67_RS10000 (L0F67_09985) - 2043669..2044334 (+) 666 WP_014991637.1 alpha/beta hydrolase -
  L0F67_RS10005 (L0F67_09990) - 2044349..2045341 (+) 993 WP_039195730.1 MBL fold metallo-hydrolase -
  L0F67_RS10010 (L0F67_09995) - 2045403..2046587 (+) 1185 WP_014991639.1 YbfB/YjiJ family MFS transporter -
  L0F67_RS10015 (L0F67_10000) - 2046647..2047297 (+) 651 WP_014991640.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19627.47 Da        Isoelectric Point: 5.2869

>NTDB_id=554899 L0F67_RS09985 WP_014991634.1 2041868..2042404(+) (ssb) [Actinobacillus suis strain D20_277]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKQAA
KPAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=554899 L0F67_RS09985 WP_014991634.1 2041868..2042404(+) (ssb) [Actinobacillus suis strain D20_277]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGATCGTTACACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGCGATTTCGGCGGCAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGTTATGACCAAACAGCAAGCCGCCCTGCTCAACAAGCTGCAAAACAAGCTGCA
AAACCAGCTCAAGCAGAACCACCAATGGATAACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

76.216

100

0.792
  ssb Vibrio cholerae strain A1552

55.556

100

0.59
  ssb Neisseria meningitidis MC58

47.429

98.315

0.466
  ssb Neisseria gonorrhoeae MS11

47.429

98.315

0.466