Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   L0F67_RS09980 Genome accession   NZ_CP090556
Coordinates   2038888..2041716 (-) Length   942 a.a.
NCBI ID   WP_014991633.1    Uniprot ID   A0ABT1WR69
Organism   Actinobacillus suis strain D20_277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2033888..2046716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS09955 (L0F67_09940) trpR 2033993..2034301 (-) 309 WP_014991628.1 trp operon repressor -
  L0F67_RS09960 (L0F67_09945) lolA 2034375..2035015 (-) 641 Protein_1912 outer membrane lipoprotein chaperone LolA -
  L0F67_RS09965 (L0F67_09950) polA 2035174..2038047 (-) 2874 WP_014991630.1 DNA polymerase I -
  L0F67_RS09970 (L0F67_09955) - 2038228..2038512 (+) 285 WP_014991631.1 hypothetical protein -
  L0F67_RS09975 (L0F67_09960) - 2038521..2038814 (+) 294 WP_014991632.1 hypothetical protein -
  L0F67_RS09980 (L0F67_09965) uvrA 2038888..2041716 (-) 2829 WP_014991633.1 excinuclease ABC subunit UvrA Machinery gene
  L0F67_RS09985 (L0F67_09970) ssb 2041868..2042404 (+) 537 WP_014991634.1 single-stranded DNA-binding protein Machinery gene
  L0F67_RS09990 (L0F67_09975) - 2042593..2042904 (+) 312 WP_014991635.1 helix-turn-helix transcriptional regulator -
  L0F67_RS09995 (L0F67_09980) - 2042983..2043669 (+) 687 WP_014991636.1 DsbA family oxidoreductase -
  L0F67_RS10000 (L0F67_09985) - 2043669..2044334 (+) 666 WP_014991637.1 alpha/beta hydrolase -
  L0F67_RS10005 (L0F67_09990) - 2044349..2045341 (+) 993 WP_039195730.1 MBL fold metallo-hydrolase -
  L0F67_RS10010 (L0F67_09995) - 2045403..2046587 (+) 1185 WP_014991639.1 YbfB/YjiJ family MFS transporter -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104435.87 Da        Isoelectric Point: 6.5127

>NTDB_id=554898 L0F67_RS09980 WP_014991633.1 2038888..2041716(-) (uvrA) [Actinobacillus suis strain D20_277]
MQYIDVRGARTHNLKNINLILPRDKFIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTVTEIHDYLRLLFARVGEPRCPDHDLPLAAQTISQMVDRVMEEPEGKRLMLLAPVVKDRKG
EHVKLLENLTASGYIRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRSDITTRLAESFETALDLSGSTAIIADMDDP
SADEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGACPTCDGLGVEQYFDPNKVVQNPDVSLASGAIKGWDRRSFYYFGL
LKSVADHYDFSLDTPFKELTKKQREIILNGSKDEIEFVYVNDRGDKVKRKHTFEGVLNNMARRYKETESNSVREELAKYI
NNRPCVECEGSRLRREARYVFLDKTNLPMVSEKSIGEALEFFEQLDLAGQKAKIAEKILKEIRERLQFLVNVGLNYLSLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAIRAADHIVDIG
PGAGVHGGQVIAQGTAEEIMQVEDSITGQFLSGKQKIEIPAKRVPYDAAKLLTLKGASGNNLKQVQLDIPVGLFTCITGV
SGSGKSTLINDTLFPLAQNALNRAERTDVAPYESIDGLSHFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGTQEA
RARGYNVGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLDMTVEEAREFFA
PVPAIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLSVLHKLRDQ
GNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEEVAKDKRSHTARFLKEILAKG

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=554898 L0F67_RS09980 WP_014991633.1 2038888..2041716(-) (uvrA) [Actinobacillus suis strain D20_277]
ATGCAGTACATTGATGTTCGTGGTGCGAGAACCCACAACCTTAAAAATATCAACTTAATTCTCCCTCGAGATAAATTTAT
TGTAATTACCGGCTTATCCGGATCGGGTAAGTCTTCTTTAGCTTTTGATACGCTGTATGCGGAAGGGCAACGCCGTTATG
TCGAATCCCTTTCTGCTTATGCACGCCAATTCCTTTCATTGATGGAAAAACCAGATGTTGACCATATTGAAGGGCTTTCA
CCGGCAATTTCTATTGAGCAAAAATCCACTTCGCATAACCCTCGTTCCACGGTGGGGACGGTAACTGAAATCCACGACTA
TTTACGTCTATTATTTGCCCGAGTGGGCGAGCCTCGTTGTCCGGATCACGATTTACCGTTGGCGGCACAAACCATTTCGC
AAATGGTGGATAGAGTAATGGAAGAGCCGGAAGGCAAGCGTTTGATGTTACTTGCACCGGTGGTCAAAGATCGTAAAGGC
GAACACGTAAAATTATTGGAAAATTTGACCGCTTCCGGCTATATCCGAGCCAGAATTGACGGCGAAATCTGTGATTTATC
TGATCCGCCGGCATTGGAATTACAGAAAAAGCACACAATTGAAGTGGTGGTCGATCGCTTTAAAGTGAGAAGTGATATTA
CAACACGTTTAGCGGAATCGTTTGAAACGGCATTGGATTTATCCGGTTCGACTGCGATTATTGCTGATATGGATGATCCG
AGTGCGGACGAAATCGTCTTTTCGTCTAGTTTTGCTTGTCCGCATTGCGGCTATTCGTTACACGAATTAGAGCCTCGTTT
GTTCTCATTTAATAACCCAGCGGGTGCTTGCCCAACCTGTGACGGCTTAGGGGTAGAACAGTATTTTGACCCGAACAAAG
TGGTACAGAATCCGGATGTCTCGTTAGCGAGTGGTGCGATTAAAGGTTGGGATCGCCGTAGCTTTTACTATTTCGGTTTG
TTGAAATCGGTGGCGGATCATTATGATTTTTCACTGGATACGCCATTTAAAGAGCTGACTAAAAAACAACGTGAAATTAT
TCTGAACGGTTCAAAAGACGAAATTGAATTTGTTTATGTTAATGATCGTGGCGATAAAGTAAAACGTAAACATACCTTTG
AAGGTGTGTTAAATAATATGGCTCGCCGTTATAAAGAAACCGAGTCGAATTCGGTGCGAGAAGAATTAGCGAAATATATC
AATAATCGCCCGTGTGTGGAGTGTGAAGGTTCTCGCTTACGCCGTGAAGCTCGTTACGTATTTTTAGATAAAACTAATTT
GCCGATGGTATCGGAGAAATCGATTGGCGAAGCGTTAGAATTTTTTGAACAGTTAGATCTTGCCGGTCAAAAAGCGAAGA
TTGCGGAGAAAATTTTAAAAGAAATTCGTGAACGTTTGCAGTTCTTGGTCAATGTCGGCTTGAATTACCTCTCGCTTTCT
CGTTCGGCAGAAACCTTATCTGGTGGTGAAGCTCAACGTATTCGTTTAGCCAGCCAAATCGGTGCGGGTTTAGTTGGGGT
AATGTATGTGCTTGATGAACCGTCTATCGGCTTGCACCAACGTGATAACGAACGTTTATTAAATACCTTAATTCATCTGC
GTAATTTGGGTAATACCGTGATTGTGGTGGAGCATGATGAAGATGCGATCCGTGCGGCGGATCATATTGTGGATATCGGC
CCTGGGGCAGGTGTACATGGTGGTCAAGTTATTGCGCAAGGTACGGCAGAAGAAATTATGCAGGTGGAAGATTCGATTAC
CGGACAATTCCTTTCCGGTAAGCAGAAAATTGAAATTCCGGCAAAACGAGTGCCTTATGACGCAGCAAAATTGCTCACCT
TAAAAGGGGCGAGTGGTAATAACTTAAAACAAGTACAGTTGGATATTCCGGTGGGTTTATTCACTTGTATTACCGGTGTG
TCGGGTTCGGGTAAGTCGACTTTAATCAATGATACCTTGTTCCCGTTAGCACAAAATGCATTAAATCGTGCGGAACGTAC
TGATGTCGCACCTTATGAATCGATTGATGGCTTGTCGCATTTCGATAAAGTGATTGATATCGACCAAAGCCCAATTGGAC
GTACGCCTCGTTCAAATCCGGCAACTTATACCGGTTTATTCACGCCGATTCGTGAATTATTTGCCGGCACACAAGAAGCG
AGAGCGAGAGGCTATAATGTCGGACGCTTTAGTTTTAACGTGCGAGGCGGACGTTGTGAAGCCTGCCAAGGCGATGGCGT
GATTAAAGTGGAAATGCACTTCCTACCGGATGTGTATGTGCCGTGTGATCACTGTAAAGGTAAACGTTATAACCGAGAAA
CCTTGGAAATCCGTTACAAAGGCAAAACGATTCATCAAGTGCTGGATATGACGGTGGAAGAGGCGAGAGAATTTTTTGCA
CCGGTGCCGGCGATTGCGCGTAAATTGCAGACGTTAATGGATGTCGGTTTATCGTATATTCGCTTAGGACAGTCTTCGAC
TACACTTTCCGGCGGCGAAGCGCAGCGTGTTAAATTAGCGACCGAGCTTTCCAAACGTGATACCGGCAAAACGCTGTATA
TCTTAGATGAACCGACTACCGGTTTACATTTTGCCGATATTAAACAATTACTTTCAGTGCTACACAAATTGCGTGACCAA
GGCAATACAATTGTGGTGATCGAGCATAATTTAGATGTGATTAAAACTGCCGACTGGATTGTTGATTTAGGCCCTGAAGG
CGGTTCGGGTGGCGGACAAATTATTGCAACCGGCACACCAGAAGAGGTAGCGAAAGACAAACGCTCGCACACGGCAAGAT
TCTTAAAAGAGATTTTAGCCAAAGGCTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.716

99.575

0.565
  uvrA Streptococcus pneumoniae TIGR4

56.716

99.575

0.565
  uvrA Streptococcus pneumoniae D39

56.716

99.575

0.565