Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J7655_RS01600 Genome accession   NZ_CP072610
Coordinates   340482..341975 (-) Length   497 a.a.
NCBI ID   WP_230926272.1    Uniprot ID   -
Organism   Pseudomonas wenzhouensis strain A20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 331748..347421 340482..341975 within 0


Gene organization within MGE regions


Location: 331748..347421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7655_RS01575 (J7655_01565) rep 331748..333757 (-) 2010 WP_230926267.1 DNA helicase Rep -
  J7655_RS01580 (J7655_01570) - 334026..335693 (+) 1668 WP_230926268.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  J7655_RS01585 (J7655_01575) - 335751..337136 (-) 1386 WP_230926269.1 NorM family multidrug efflux MATE transporter -
  J7655_RS01590 (J7655_01580) - 337276..338196 (+) 921 WP_230926270.1 LysR substrate-binding domain-containing protein -
  J7655_RS20875 - 338504..339625 (+) 1122 Protein_310 Cache 3/Cache 2 fusion domain-containing protein -
  J7655_RS20880 - 339758..340480 (+) 723 WP_420850926.1 methyl-accepting chemotaxis protein -
  J7655_RS01600 (J7655_01590) comM 340482..341975 (-) 1494 WP_230926272.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J7655_RS01605 (J7655_01595) - 342010..342270 (-) 261 WP_230926273.1 accessory factor UbiK family protein -
  J7655_RS01610 (J7655_01600) glnK 342679..343017 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  J7655_RS01615 (J7655_01605) - 343352..344605 (+) 1254 WP_230926274.1 ammonium transporter -
  J7655_RS01620 (J7655_01610) - 344704..345129 (+) 426 WP_230926275.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  J7655_RS01625 (J7655_01615) sutA 345206..345529 (+) 324 WP_074861275.1 transcriptional regulator SutA -
  J7655_RS01630 (J7655_01620) - 345824..346522 (-) 699 WP_230926276.1 HAD family hydrolase -
  J7655_RS01635 (J7655_01625) xerC 346519..347421 (-) 903 WP_230926277.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52623.42 Da        Isoelectric Point: 8.2157

>NTDB_id=554553 J7655_RS01600 WP_230926272.1 340482..341975(-) (comM) [Pseudomonas wenzhouensis strain A20]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNAAFEFPSKRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPAQSLDEYECLGELALSGAVRPVQGVLPAALAARAAGRTLMVPHANAEEASLASGLKVIAVEHL
LQIAAHLNGSAPLDAYLAQGLLRQSRPYPDLAEVQGQSAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLDE
SEALQVAAIHSVASHAPLQHWPQRPFRTPHHSASGPALVGGGSRPQPGEITLAHMGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSNRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVARETTALNAAPQD
GESTAQAAAKVAQARARQLQRQGVANAFLDLPGLRQHCALGDADRQWLEGACERLGLSLRAAHRVLKVARTLADLAEEQH
ISRAHLAEALQYRPAAG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=554553 J7655_RS01600 WP_230926272.1 340482..341975(-) (comM) [Pseudomonas wenzhouensis strain A20]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCCCCGGCCGTCACCGTCGAAGCGCACCTGGCCAA
CGGCCTGCCGTCCCTGACCCTGGTGGGCCTGCCGGAAACGGCGGTCAAGGAGAGCAAGGATCGTGTACGCAGTGCGATCC
TCAATGCCGCGTTCGAATTTCCGAGCAAGCGCATCACCCTGAATCTGGCACCTGCCGATCTGCCGAAAGACGGCGGACGC
TTCGATCTGGCCATCGCCCTGGGTATTCTCGCCGCCAGCGGCCAGGTGCCGGCGCAGTCACTGGATGAATACGAATGCCT
GGGCGAATTGGCGCTGTCCGGCGCGGTACGCCCGGTGCAGGGCGTATTGCCCGCCGCTCTGGCCGCACGGGCCGCCGGAC
GCACCCTGATGGTGCCGCACGCCAATGCCGAAGAAGCCAGCCTGGCCTCAGGGCTGAAGGTCATCGCCGTCGAGCATCTG
TTGCAGATCGCCGCGCACCTCAACGGCAGCGCACCGCTCGACGCTTATCTTGCACAGGGGCTGCTCAGACAGAGCCGCCC
CTACCCGGATCTGGCCGAAGTCCAGGGCCAGTCGGCCGCCAAACGCGCCTTGCTGGTGGCGGCTGCCGGCTCACACAACC
TGCTGCTCAGCGGCCCGCCCGGTACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGCCGCTGGACGAA
AGCGAGGCGCTGCAGGTTGCGGCGATTCATTCGGTGGCCAGCCACGCGCCTCTGCAGCACTGGCCGCAACGCCCCTTTCG
CACCCCGCACCATAGCGCCTCGGGGCCGGCACTGGTCGGCGGCGGCAGCCGCCCGCAACCAGGTGAAATCACCCTGGCCC
ATATGGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTCGACCGCAAGGTGCTGGAAGTGCTGCGCGAACCGCTGGAAAGC
GGTCATATCGTGATTGCCCGGGCACGCGACAAGGTGCGTTTCCCGGCGCGTTTTCAGTTGGTGGCGGCGATGAATCCCTG
CCCGTGTGGCTACCTGGGTGACCCAAGCAACCGCTGTCGCTGCACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTGT
CGGGGCCACTGCTCGACCGCATCGACCTGCACCTGACGGTAGCCCGCGAAACAACGGCCCTCAATGCTGCACCGCAGGAT
GGCGAAAGCACCGCTCAGGCCGCCGCCAAGGTCGCACAGGCCCGCGCCCGGCAACTGCAGCGCCAGGGCGTGGCCAACGC
CTTTCTCGACTTGCCCGGCCTGCGCCAGCATTGCGCCCTGGGCGATGCCGACCGGCAGTGGCTGGAGGGCGCCTGCGAAC
GCCTGGGTCTGTCCCTGCGCGCGGCCCATCGCGTGCTCAAGGTCGCGCGAACCCTGGCCGACCTGGCAGAGGAACAGCAC
ATCAGCCGTGCCCACCTGGCCGAAGCGCTGCAGTATCGCCCCGCAGCAGGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.768

99.598

0.565
  comM Vibrio campbellii strain DS40M4

56.162

99.598

0.559
  comM Haemophilus influenzae Rd KW20

55.09

100

0.555
  comM Glaesserella parasuis strain SC1401

55.2

100

0.555
  comM Legionella pneumophila str. Paris

49.901

100

0.509
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.016

100

0.465