Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J8I88_RS16895 Genome accession   NZ_CP072598
Coordinates   3670536..3672056 (+) Length   506 a.a.
NCBI ID   WP_067426791.1    Uniprot ID   -
Organism   Duffyella gerundensis isolate A4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3665536..3677056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8I88_RS16875 (J8I88_16875) ilvE 3667110..3668039 (-) 930 WP_067426799.1 branched-chain-amino-acid transaminase -
  J8I88_RS16880 (J8I88_16880) ilvM 3668059..3668316 (-) 258 WP_067426797.1 acetolactate synthase 2 small subunit -
  J8I88_RS16885 (J8I88_16885) ilvG 3668313..3669959 (-) 1647 WP_067426794.1 acetolactate synthase 2 catalytic subunit -
  J8I88_RS16890 (J8I88_16890) ilvL 3670110..3670208 (-) 99 WP_187487116.1 ilv operon leader peptide -
  J8I88_RS16895 (J8I88_16895) comM 3670536..3672056 (+) 1521 WP_067426791.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J8I88_RS16900 (J8I88_16900) - 3672085..3672423 (-) 339 WP_067426789.1 DUF413 domain-containing protein -
  J8I88_RS16905 (J8I88_16905) hdfR 3672545..3673372 (+) 828 WP_209500924.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54948.86 Da        Isoelectric Point: 7.2264

>NTDB_id=554491 J8I88_RS16895 WP_067426791.1 3670536..3672056(+) (comM) [Duffyella gerundensis isolate A4]
MSLSIVLTRALLGVNAPLVTVEVHISNGLPAFSLVGLPETTVKEARDRVRSAIINSGFSFPARRITVNLAPADLPKEGGR
YDLPIAIAVLVASEQVPADKLTQYEFLGELALTGTLRGVQGAIPAAMAALAATRQLILSADNQADVGLIQQGQSLIGEHL
LDVCAFLHGKQELAAAEAQPYQEAVHSADLNDVTGQHQARRALEITAAGGHNLLLIGPPGTGKTMLATRLSGLMPPLTEQ
EALECAAIASLSDSGNLHKQWRQRPFRAPHHSASLFALIGGGSLPRPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GEIAISRARAKVTYPARFQLIAAMNPSPTGHYQGNHNRCSPQQTLRYLSRLSGPFLDRFDLSLEVPLLPSGTLSQRESVN
ESSDVVRQRVQAARTIQLTRAGKVNAALNNKEIQQWCEIDMESAQWLENVLNTLGLSVRAWQRILKVSRTIADLAGKEGI
HREHLQEALSYRGIDRLLIHLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=554491 J8I88_RS16895 WP_067426791.1 3670536..3672056(+) (comM) [Duffyella gerundensis isolate A4]
ATGTCGCTTTCCATCGTATTAACACGCGCACTGCTGGGCGTTAACGCGCCTCTGGTGACGGTTGAAGTCCACATCAGCAA
TGGATTGCCCGCCTTTTCTCTGGTGGGCCTGCCGGAGACCACCGTGAAAGAGGCACGCGATCGGGTACGCAGCGCCATTA
TCAATAGCGGCTTCAGCTTTCCTGCTCGCCGTATTACGGTAAATTTAGCGCCAGCGGATCTCCCTAAAGAAGGGGGACGT
TACGATCTGCCTATCGCTATTGCCGTTCTGGTCGCTTCAGAGCAGGTTCCTGCAGATAAGCTGACGCAGTATGAGTTTCT
GGGTGAGCTGGCGCTTACAGGCACGCTAAGGGGCGTTCAGGGAGCAATCCCGGCGGCAATGGCTGCCCTGGCGGCGACGC
GGCAGCTAATCCTGTCTGCGGATAATCAGGCGGATGTTGGATTAATCCAACAAGGTCAGTCGTTAATCGGCGAACATCTG
CTGGATGTCTGTGCCTTTCTGCATGGTAAACAGGAGCTGGCTGCTGCGGAAGCTCAGCCTTATCAGGAAGCGGTACACAG
CGCAGATTTGAATGATGTTACCGGTCAGCATCAGGCGCGGCGCGCGCTGGAGATTACCGCGGCGGGCGGACACAACCTGC
TGCTGATTGGTCCGCCCGGTACCGGTAAAACAATGCTGGCCACACGCTTGTCGGGCCTGATGCCACCATTGACGGAACAG
GAGGCGCTGGAATGCGCCGCTATTGCCAGCTTGTCTGACAGCGGCAACCTGCATAAACAGTGGCGACAGCGCCCTTTTCG
CGCGCCTCATCATAGCGCATCGCTATTTGCGCTCATTGGCGGTGGTAGTTTGCCCCGACCCGGCGAGATTTCACTGGCGC
ATAATGGCGTACTCTTTCTTGATGAACTCCCGGAGTTTGAGCGTCGTGTGCTGGATGCCTTACGCGAACCGATTGAGTCC
GGTGAAATCGCTATATCACGGGCGCGAGCGAAGGTGACATATCCGGCTCGCTTTCAACTTATTGCAGCCATGAATCCAAG
CCCAACAGGGCATTATCAAGGCAACCATAACCGATGTTCGCCACAGCAGACGCTGCGCTATCTCAGTCGCCTGTCGGGCC
CATTTTTAGATCGCTTTGATCTTTCGCTGGAGGTGCCTTTATTGCCCTCAGGCACGTTAAGTCAGCGAGAAAGTGTTAAT
GAATCGAGTGACGTGGTTCGCCAGCGCGTGCAGGCGGCGCGCACAATACAGCTGACGCGTGCGGGAAAGGTCAATGCAGC
GCTCAATAACAAAGAGATTCAACAGTGGTGCGAGATCGATATGGAAAGTGCGCAGTGGCTGGAAAATGTATTAAACACAC
TGGGGCTATCGGTAAGAGCGTGGCAGCGAATCCTAAAGGTCTCGCGTACTATTGCCGATTTAGCAGGTAAGGAAGGTATA
CATCGGGAGCATCTTCAGGAAGCGTTAAGTTATCGTGGCATTGATCGGCTGTTGATTCATTTGCATAAAAGCCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.736

100

0.619
  comM Glaesserella parasuis strain SC1401

60.75

100

0.609
  comM Vibrio cholerae strain A1552

59.96

99.209

0.595
  comM Vibrio campbellii strain DS40M4

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

49.095

98.221

0.482
  comM Legionella pneumophila strain ERS1305867

49.095

98.221

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.407

0.439