Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J5226_RS06010 Genome accession   NZ_CP072597
Coordinates   1412292..1413818 (-) Length   508 a.a.
NCBI ID   WP_215838941.1    Uniprot ID   -
Organism   Lysobacter sp. K5869     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1407292..1418818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5226_RS05985 (J5226_05985) - 1407786..1408868 (+) 1083 WP_215838936.1 nitronate monooxygenase -
  J5226_RS05990 (J5226_05990) - 1409049..1410062 (-) 1014 WP_215838937.1 alpha/beta hydrolase -
  J5226_RS05995 (J5226_05995) - 1410300..1410455 (-) 156 WP_215838938.1 hypothetical protein -
  J5226_RS06000 (J5226_06000) - 1410759..1411589 (-) 831 WP_215838939.1 AraC family transcriptional regulator -
  J5226_RS06005 (J5226_06005) - 1411809..1412183 (-) 375 WP_215838940.1 hypothetical protein -
  J5226_RS06010 (J5226_06010) comM 1412292..1413818 (-) 1527 WP_215838941.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J5226_RS06015 (J5226_06015) - 1413829..1414095 (-) 267 WP_215838942.1 accessory factor UbiK family protein -
  J5226_RS06020 (J5226_06020) - 1414448..1414786 (+) 339 WP_031371341.1 P-II family nitrogen regulator -
  J5226_RS06025 (J5226_06025) - 1414834..1416084 (-) 1251 WP_215838943.1 ABC transporter permease -
  J5226_RS06030 (J5226_06030) - 1416123..1417433 (-) 1311 WP_215838944.1 ABC transporter permease -
  J5226_RS06035 (J5226_06035) - 1417444..1418199 (-) 756 WP_215838945.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54001.76 Da        Isoelectric Point: 9.0197

>NTDB_id=554457 J5226_RS06010 WP_215838941.1 1412292..1413818(-) (comM) [Lysobacter sp. K5869]
MNLALVHSRARTGVRAPAVRVEVHLGGGLPCMNLVGLPEAAVREAKDRVRAAIQSAQYEFPQRRITVNLAPADLPKDGGR
YDLAIALGILAASGQLPLQAFADCEFLGELGLTGELRAIDGVLPAALAAAEAGRRLIVPAGNGAEAALASRVEARTARTL
SEVCAMLCERASLPRAVAPPLARAPELDMRDVRGQTQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEASEDE
ALETAAIASVGGGGHGRALDPARWRQRPFRAPHHTASAVALVGGGADPRPGEISLAHHGVLFLDELPEWERRALEVLREP
LESGVVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDSSARCRCTQDIVRRYRARISGPLLDRIDLHIEVPRLPPSALRP
DQPEGESSAAIRARVAAARQRQHARSGKTNARLDQAETAQHCRLGERDQALLERAVEGLQLSARSMHRILRVARTIADLA
GSEAIATAHLSEAIGYRRADRDSATRAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=554457 J5226_RS06010 WP_215838941.1 1412292..1413818(-) (comM) [Lysobacter sp. K5869]
ATGAACCTGGCGCTCGTGCACAGCCGTGCGCGAACGGGGGTGCGCGCGCCGGCGGTACGGGTCGAGGTGCATTTGGGCGG
CGGCCTGCCGTGCATGAACCTCGTCGGCCTGCCCGAAGCCGCGGTGCGCGAAGCCAAGGACCGGGTGCGCGCGGCGATCC
AGTCGGCGCAATACGAATTCCCGCAGCGGCGCATCACCGTCAACCTCGCGCCCGCCGATCTGCCCAAGGACGGCGGCCGC
TACGATCTGGCCATCGCGCTCGGCATCCTCGCCGCCAGCGGGCAGCTGCCGCTGCAAGCCTTCGCCGATTGCGAATTCCT
CGGCGAACTCGGCCTTACCGGCGAGTTGCGCGCGATCGACGGCGTGCTGCCGGCGGCGCTGGCCGCGGCCGAGGCCGGAC
GCCGCCTGATCGTGCCGGCCGGCAACGGCGCCGAAGCGGCGCTGGCGAGCCGGGTCGAGGCGCGCACCGCGCGCACGCTG
TCGGAAGTCTGCGCGATGCTGTGCGAACGCGCGTCGCTGCCGCGCGCGGTGGCTCCGCCGCTGGCGCGCGCGCCCGAGCT
GGACATGCGCGACGTGCGCGGCCAGACCCAGGCGCGGCGCGCGCTGGAGATCGCCGCGGCCGGCGGTCATCACCTGCTGC
TGATCGGCCCGCCCGGCTGCGGCAAGACCTTGCTCGCCTCGCGCCTGCCCGGCCTGTTGCCCGAAGCCAGCGAAGACGAA
GCGCTGGAAACCGCCGCCATCGCCTCGGTCGGCGGCGGCGGCCACGGCCGCGCCTTGGATCCCGCGCGCTGGCGCCAACG
GCCGTTCCGCGCGCCGCACCACACCGCCAGCGCGGTCGCCCTGGTCGGCGGCGGCGCCGATCCGCGTCCGGGCGAGATCT
CGCTCGCGCATCACGGCGTGCTGTTTCTCGACGAGTTGCCCGAATGGGAACGGCGCGCGCTGGAAGTGCTGCGCGAACCC
TTGGAATCCGGCGTCGTCACGGTCTCGCGCGCGGCGCGCAGCGCGGAGTTTCCGGCGCGCTTCCAGTTGGTCGCGGCGAT
GAATCCATGCCCCTGCGGCTGGGCCGGCGACAGCAGCGCGCGTTGCCGCTGCACCCAGGACATCGTCCGCCGCTATCGCG
CGCGCATCTCCGGCCCCTTGCTCGACCGCATCGACCTGCACATCGAAGTGCCGCGCCTGCCGCCCTCGGCGCTGCGGCCC
GATCAGCCCGAAGGCGAATCCAGCGCGGCGATCCGCGCGCGCGTCGCCGCAGCGCGCCAGCGCCAGCACGCGCGCAGCGG
CAAGACCAACGCGCGCCTGGATCAGGCCGAGACCGCGCAGCACTGCCGGCTCGGCGAACGCGATCAGGCCTTGCTCGAAC
GCGCGGTCGAAGGGCTGCAATTGTCGGCGCGGTCGATGCACCGGATCCTGCGCGTGGCGCGCACCATCGCCGACCTCGCG
GGCAGCGAAGCCATCGCCACCGCGCATCTGAGCGAAGCCATCGGTTACCGGCGCGCGGACCGCGACAGCGCGACGCGGGC
GGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.467

99.016

0.549
  comM Glaesserella parasuis strain SC1401

53.057

99.803

0.53
  comM Vibrio campbellii strain DS40M4

53.28

99.016

0.528
  comM Haemophilus influenzae Rd KW20

52.883

99.016

0.524
  comM Legionella pneumophila str. Paris

51.697

98.622

0.51
  comM Legionella pneumophila strain ERS1305867

51.697

98.622

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.597

100

0.459