Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   J7649_RS09575 Genome accession   NZ_CP072549
Coordinates   2016882..2018021 (+) Length   379 a.a.
NCBI ID   WP_219307657.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2011882..2023021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS09555 (J7649_09555) - 2012429..2014444 (-) 2016 WP_219307646.1 TonB-dependent copper receptor -
  J7649_RS09560 (J7649_09560) - 2014517..2014927 (-) 411 WP_004644876.1 DUF2946 family protein -
  J7649_RS09565 (J7649_09565) def 2015020..2015550 (-) 531 WP_044112406.1 peptide deformylase -
  J7649_RS09570 (J7649_09570) tsaP 2015671..2016825 (+) 1155 WP_219307655.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  J7649_RS09575 (J7649_09575) dprA 2016882..2018021 (+) 1140 WP_219307657.1 DNA-processing protein DprA Machinery gene
  J7649_RS09580 (J7649_09580) - 2018063..2018632 (+) 570 WP_086044343.1 L-threonylcarbamoyladenylate synthase -
  J7649_RS09585 (J7649_09585) - 2019078..2019974 (-) 897 WP_219307660.1 DMT family transporter -
  J7649_RS09590 (J7649_09590) - 2020165..2020710 (+) 546 WP_180038387.1 glutathione peroxidase -
  J7649_RS09595 (J7649_09595) - 2021040..2021639 (+) 600 WP_005108413.1 hypothetical protein -
  J7649_RS09600 (J7649_09600) - 2021781..2022797 (+) 1017 WP_005245301.1 pirin family protein -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42514.39 Da        Isoelectric Point: 6.6178

>NTDB_id=554134 J7649_RS09575 WP_219307657.1 2016882..2018021(+) (dprA) [Acinetobacter lwoffii strain H7]
MLNPLSRAQLETITLWYLVQHSLSSFYKISQHYAELAHALQPDQVPVWQALGLHANHVQRLKEFYLPEARQKFQRCLQQI
QQDSDFILLHSDPHYPQQLHPYADKPPIIFGQGRSDTLLQAQIAIVGSRKPSPHGRQVAYDFAFYLSEQGFYINSGLAYG
IDEAAHRAALQHQGTIAVMATGLDQTYPAQHQSLRQQIIEHDGAVISEFLPDTLPLQHHFPRRNRIVSGLSLGVIVAEAA
LKSGSLITAKLAAEQGKTVFAIPGHIYSEHHQGCHQLIREGAILIDHPQQVIEELALATQWQALENTPKLEVAAAESQQI
PPHLLSLYNQLDWVGQSLDQLGTQVQQEVSALTSQLMELELLGFCTQQAGLYLRCRILK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=554134 J7649_RS09575 WP_219307657.1 2016882..2018021(+) (dprA) [Acinetobacter lwoffii strain H7]
ATGCTGAACCCGTTATCACGCGCGCAACTGGAAACAATTACGTTATGGTATCTAGTTCAGCATTCTCTTTCGAGTTTCTA
TAAAATCAGTCAACATTATGCCGAACTGGCGCATGCCCTTCAGCCGGATCAAGTACCCGTCTGGCAAGCACTCGGCCTTC
ATGCCAATCATGTGCAGCGCTTAAAAGAGTTTTACCTCCCAGAAGCGCGGCAAAAATTTCAGCGATGTCTGCAGCAGATC
CAGCAGGATAGCGATTTTATTTTGCTGCACAGCGATCCGCATTATCCTCAGCAGTTGCATCCTTATGCAGATAAACCACC
GATCATTTTTGGTCAGGGTAGATCCGATACCCTGCTTCAGGCACAGATTGCCATTGTGGGCAGCCGCAAACCCAGTCCAC
ACGGCCGGCAAGTAGCTTATGACTTTGCTTTTTATTTGAGTGAACAGGGTTTCTATATCAATAGCGGTCTGGCATACGGT
ATTGATGAAGCAGCGCATCGGGCTGCGTTACAGCATCAAGGGACAATTGCAGTGATGGCGACTGGACTGGATCAAACCTA
TCCAGCACAACATCAATCACTACGCCAGCAAATCATTGAGCACGATGGTGCAGTCATCAGTGAGTTTCTACCAGATACGC
TGCCTTTGCAACACCATTTCCCACGGCGCAACCGAATCGTCAGTGGTTTAAGTCTAGGTGTGATTGTGGCAGAGGCTGCA
TTAAAAAGTGGTTCTCTGATTACGGCTAAACTGGCAGCTGAGCAAGGTAAAACTGTGTTTGCCATTCCGGGACATATTTA
CAGCGAGCATCATCAGGGCTGCCACCAACTGATTCGTGAAGGTGCAATTTTGATTGATCACCCGCAGCAGGTCATCGAAG
AACTGGCACTGGCGACGCAATGGCAGGCTTTGGAAAATACTCCCAAACTGGAAGTCGCTGCAGCAGAATCACAACAGATC
CCACCACATCTTCTTAGTCTGTATAATCAGCTGGACTGGGTGGGACAGAGTTTGGATCAACTGGGAACGCAGGTTCAGCA
AGAGGTATCTGCTTTGACCAGCCAACTCATGGAACTGGAGTTACTCGGTTTTTGTACCCAGCAAGCCGGCCTCTATCTAC
GTTGTCGGATTCTCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.628

99.208

0.641

  dprA Acinetobacter baumannii D1279779

64.096

99.208

0.636

  dprA Acinetobacter baylyi ADP1

59.843

100

0.602

  dprA Vibrio cholerae strain A1552

43.243

87.863

0.38