Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   J7649_RS09570 Genome accession   NZ_CP072549
Coordinates   2015671..2016825 (+) Length   384 a.a.
NCBI ID   WP_219307655.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010671..2021825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS09555 (J7649_09555) - 2012429..2014444 (-) 2016 WP_219307646.1 TonB-dependent copper receptor -
  J7649_RS09560 (J7649_09560) - 2014517..2014927 (-) 411 WP_004644876.1 DUF2946 family protein -
  J7649_RS09565 (J7649_09565) def 2015020..2015550 (-) 531 WP_044112406.1 peptide deformylase -
  J7649_RS09570 (J7649_09570) tsaP 2015671..2016825 (+) 1155 WP_219307655.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  J7649_RS09575 (J7649_09575) dprA 2016882..2018021 (+) 1140 WP_219307657.1 DNA-processing protein DprA Machinery gene
  J7649_RS09580 (J7649_09580) - 2018063..2018632 (+) 570 WP_086044343.1 L-threonylcarbamoyladenylate synthase -
  J7649_RS09585 (J7649_09585) - 2019078..2019974 (-) 897 WP_219307660.1 DMT family transporter -
  J7649_RS09590 (J7649_09590) - 2020165..2020710 (+) 546 WP_180038387.1 glutathione peroxidase -
  J7649_RS09595 (J7649_09595) - 2021040..2021639 (+) 600 WP_005108413.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42186.47 Da        Isoelectric Point: 9.0644

>NTDB_id=554133 J7649_RS09570 WP_219307655.1 2015671..2016825(+) (tsaP) [Acinetobacter lwoffii strain H7]
MKKVLKGMPFFSALGFKNQMLALAICVGVSMGTIHSAEAAPARNVNPPALKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLMAPDSVQGTPYILGTADQRVLAGKGQKVYVRGNGLEVGKRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQIMVFKNFDQLSYAYVLESELPIKVGAGIQAPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=554133 J7649_RS09570 WP_219307655.1 2015671..2016825(+) (tsaP) [Acinetobacter lwoffii strain H7]
ATGAAAAAGGTTTTAAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCTATTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCCGCCGAGGCAGCACCTGCACGTAACGTCAATCCACCGGCATTAAAAGCCAGTG
CACCGAACGTGTATGTGGTGAAAAAAGGAGATACACTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTACGTTGG
CCGGAAATCTGGGCCAGCAACAAGCACGTCAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTACTGATGTGTGATTA
CCAGGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGCATTATCAGCCGTTATCTGGGTAGCACCTCCT
TGCAACCTCAGATTCGGGTTGAATCGTTAAACAATACCATTCCAGTAATTCCACTAGAACATATCAAGCAGTGGTTGGAA
CGCTACACCCTGATGGCACCTGATTCAGTTCAAGGTACGCCATATATTCTTGGAACTGCCGATCAGCGCGTACTGGCAGG
CAAAGGCCAGAAAGTCTATGTACGTGGTAACGGTCTGGAAGTTGGTAAACGCTATGCCGTGTATCGCGAAGCTGAACCGT
ATGTATTTACCGATGCGAATGGCAAGAAATATACGGCTGCACTCGAGCTGCAACAGGTGGCATCCGGTATTGCAGTTCGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCGGTGATCGTGTCTTACCAGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGCCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTTGTCACCATTGACCGTGGTACAGCACATGGAGTTCAGACGGGTCAT
GTCTTTAGTGTGAATCAAAAAGGTGAAGTGGTCACTGATCCTAAAACTAAAGAACGTGTGCAATTGCCAGGTGAGCGTAT
TGGCCAAATCATGGTATTCAAAAACTTCGATCAATTAAGCTATGCCTATGTGCTAGAGAGCGAATTACCAATCAAGGTTG
GTGCAGGAATTCAAGCACCTCTTTTAGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.753

100

0.669