Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | J5X96_RS08240 | Genome accession | NZ_CP072548 |
| Coordinates | 1692803..1693132 (+) | Length | 109 a.a. |
| NCBI ID | WP_209362974.1 | Uniprot ID | - |
| Organism | Aggregatibacter sp. 2125159857 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1687803..1698132
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5X96_RS08210 (J5X96_08210) | - | 1687854..1688855 (-) | 1002 | WP_245193461.1 | YadA C-terminal domain-containing protein | - |
| J5X96_RS08215 (J5X96_08215) | zevA | 1689530..1690162 (+) | 633 | WP_209362967.1 | zinc transporter binding subunit ZevA | - |
| J5X96_RS08220 (J5X96_08220) | - | 1690460..1691218 (+) | 759 | WP_209362969.1 | beta-methylgalactoside transporter | - |
| J5X96_RS08225 (J5X96_08225) | - | 1691226..1691777 (+) | 552 | WP_209362970.1 | septation protein A | - |
| J5X96_RS08230 (J5X96_08230) | yciA | 1691781..1692242 (+) | 462 | WP_021616162.1 | acyl-CoA thioester hydrolase YciA | - |
| J5X96_RS08235 (J5X96_08235) | - | 1692262..1692558 (+) | 297 | WP_209362972.1 | YciI family protein | - |
| J5X96_RS08240 (J5X96_08240) | comE1/comEA | 1692803..1693132 (+) | 330 | WP_209362974.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| J5X96_RS08245 (J5X96_08245) | rdgB | 1693255..1693854 (+) | 600 | WP_048749301.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| J5X96_RS08250 (J5X96_08250) | - | 1693897..1694220 (+) | 324 | WP_006719266.1 | YbjQ family protein | - |
| J5X96_RS08255 (J5X96_08255) | hemW | 1694220..1695389 (+) | 1170 | WP_209362976.1 | radical SAM family heme chaperone HemW | - |
| J5X96_RS08260 (J5X96_08260) | rpiA | 1695486..1696142 (+) | 657 | WP_209362978.1 | ribose-5-phosphate isomerase RpiA | - |
| J5X96_RS08265 (J5X96_08265) | serA | 1696161..1697393 (+) | 1233 | WP_209362980.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11503.34 Da Isoelectric Point: 9.7284
>NTDB_id=554103 J5X96_RS08240 WP_209362974.1 1692803..1693132(+) (comE1/comEA) [Aggregatibacter sp. 2125159857]
MKVMKHLLASLFVLGTVFTGTAMAAEKAAEPATQTEQPAATAAVTQQVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAIEQLLEVQGIGKATLEKNRDRIVL
MKVMKHLLASLFVLGTVFTGTAMAAEKAAEPATQTEQPAATAAVTQQVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAIEQLLEVQGIGKATLEKNRDRIVL
Nucleotide
Download Length: 330 bp
>NTDB_id=554103 J5X96_RS08240 WP_209362974.1 1692803..1693132(+) (comE1/comEA) [Aggregatibacter sp. 2125159857]
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACGGTGTTTACCGGCACTGCCATGGCAGCAGAAAA
GGCGGCAGAACCTGCAACGCAAACAGAGCAACCCGCCGCAACGGCCGCTGTTACCCAGCAAGTCAACATCAATACAGCCT
CCGCCGCAGAAATTCAAAAAGCGCTTGTGGGTATCGGGGCGAAAAAAGCGGAAGCCGTCGTGCAATACCGTGAAAAACAC
GGCGCGTTTAGCGCTATCGAGCAATTATTGGAAGTGCAAGGTATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGTACTTTAA
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACGGTGTTTACCGGCACTGCCATGGCAGCAGAAAA
GGCGGCAGAACCTGCAACGCAAACAGAGCAACCCGCCGCAACGGCCGCTGTTACCCAGCAAGTCAACATCAATACAGCCT
CCGCCGCAGAAATTCAAAAAGCGCTTGTGGGTATCGGGGCGAAAAAAGCGGAAGCCGTCGTGCAATACCGTGAAAAACAC
GGCGCGTTTAGCGCTATCGAGCAATTATTGGAAGTGCAAGGTATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGTACTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
58.036 |
100 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.982 |
100 |
0.56 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.34 |
97.248 |
0.431 |
| comEA | Vibrio cholerae C6706 |
41.509 |
97.248 |
0.404 |
| comEA | Vibrio cholerae strain A1552 |
41.509 |
97.248 |
0.404 |