Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J5X96_RS02960 Genome accession   NZ_CP072548
Coordinates   569932..571170 (-) Length   412 a.a.
NCBI ID   WP_209364312.1    Uniprot ID   -
Organism   Aggregatibacter sp. 2125159857     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 564932..576170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X96_RS02930 (J5X96_02930) - 565747..565956 (+) 210 WP_209364307.1 YnbE family lipoprotein -
  J5X96_RS02935 (J5X96_02935) - 566358..567731 (-) 1374 WP_209364308.1 sodium:alanine symporter family protein -
  J5X96_RS02940 (J5X96_02940) - 568099..568365 (-) 267 WP_209364309.1 GNAT family N-acetyltransferase -
  J5X96_RS02945 (J5X96_02945) yacG 568365..568577 (-) 213 WP_005701268.1 DNA gyrase inhibitor YacG -
  J5X96_RS02950 (J5X96_02950) coaE 568570..569190 (-) 621 WP_209364310.1 dephospho-CoA kinase -
  J5X96_RS02955 (J5X96_02955) - 569243..569935 (-) 693 WP_209364311.1 A24 family peptidase -
  J5X96_RS02960 (J5X96_02960) pilC 569932..571170 (-) 1239 WP_209364312.1 type II secretion system F family protein Machinery gene
  J5X96_RS02965 (J5X96_02965) pilB 571163..572572 (-) 1410 WP_209364313.1 GspE/PulE family protein Machinery gene
  J5X96_RS02970 (J5X96_02970) pilA 572591..573040 (-) 450 WP_209364314.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J5X96_RS02975 (J5X96_02975) ampD 573164..573718 (+) 555 WP_209364315.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J5X96_RS02980 (J5X96_02980) - 574320..574865 (+) 546 WP_033002478.1 carboxymuconolactone decarboxylase family protein -
  J5X96_RS02985 (J5X96_02985) rsuA 575040..575744 (+) 705 WP_209364316.1 16S rRNA pseudouridine(516) synthase RsuA -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 46957.68 Da        Isoelectric Point: 10.3928

>NTDB_id=554091 J5X96_RS02960 WP_209364312.1 569932..571170(-) (pilC) [Aggregatibacter sp. 2125159857]
MRKLKLFKWRGINRLQQKQKGTIVAESAMIAQQQLMSRGLQHIKLQQNWQLNSKPKNAEVCALLSQLATLLQAAVPLKNS
LQILLQHCTNIALNSWLRQLLKDIESGLAFSQALEKQHLEKQHAYLTYQDRQLIKVGEMTGKLPTVCHEIAQHKQQALAL
QRKIRKILLYPVLVLGISLILTALLLLFIVPQFAEMYDSSSAQLPTFTQVLLTLSQGLQDYWLHLLICMTLTILFIRARL
KHSPWFNRQKIRIINAMPVLNRIVQLSRLVGFSRSLFLMLQAGVPLNQALQSFLPQNPSWQRSPNVQGDWLLIEEVQSIL
HWLQQGYAFSASVSSQIFPLAAQQMLQVGEQSGQLPKMLQFIANDHQQQLDYQIDLLSQMLEPLLMVIIGGLIGLIMLGM
YLPIFNMGALVQ

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=554091 J5X96_RS02960 WP_209364312.1 569932..571170(-) (pilC) [Aggregatibacter sp. 2125159857]
ATGCGTAAACTGAAATTATTCAAGTGGCGTGGAATCAACCGTTTACAACAAAAGCAGAAAGGCACGATTGTGGCAGAAAG
CGCCATGATAGCGCAACAACAGCTAATGTCACGCGGTTTACAACACATTAAACTGCAACAAAATTGGCAATTAAACAGCA
AGCCTAAAAACGCCGAAGTCTGTGCGTTGCTTTCTCAGTTGGCGACCTTATTACAAGCGGCGGTTCCGTTAAAAAATAGT
CTGCAAATTTTGTTACAACATTGCACCAATATTGCGCTAAACAGTTGGTTGCGCCAACTTTTAAAGGATATTGAAAGCGG
TTTGGCATTTTCCCAAGCCTTAGAAAAACAACACTTAGAAAAACAACATGCCTATTTAACCTATCAAGATCGCCAATTGA
TTAAAGTCGGTGAAATGACGGGCAAGTTACCCACCGTATGCCATGAAATCGCGCAACACAAACAGCAGGCATTGGCGTTG
CAACGCAAGATTCGAAAAATTCTGCTTTACCCAGTGTTGGTACTTGGCATATCGCTGATTTTAACCGCACTTTTACTGCT
GTTTATCGTGCCGCAATTCGCTGAAATGTATGACAGCAGTAGTGCGCAACTCCCGACTTTCACCCAAGTGCTACTCACAC
TGTCGCAAGGATTACAGGATTATTGGCTGCATCTGTTAATTTGTATGACGTTGACTATTCTGTTTATTCGCGCCCGCTTG
AAACATTCCCCTTGGTTTAATCGGCAAAAAATCCGAATAATCAATGCCATGCCTGTACTGAATCGCATCGTGCAACTTTC
TCGTTTGGTGGGATTTAGTCGCAGTTTATTTTTAATGTTACAGGCGGGCGTGCCGCTGAATCAGGCTTTGCAGTCGTTTT
TACCACAAAATCCAAGTTGGCAAAGATCGCCAAACGTGCAAGGCGATTGGCTGTTAATCGAAGAAGTGCAATCCATTTTA
CACTGGCTACAACAAGGTTATGCCTTCTCCGCCAGTGTGAGTAGCCAGATTTTTCCGTTGGCGGCACAACAAATGTTACA
GGTGGGCGAACAAAGTGGTCAGCTCCCTAAAATGTTGCAATTTATTGCCAACGATCATCAACAACAATTGGACTATCAGA
TCGATCTGCTGTCACAAATGCTGGAGCCGCTGTTGATGGTCATTATCGGTGGGCTGATCGGCTTAATTATGCTCGGGATG
TATTTGCCGATTTTCAATATGGGCGCGTTGGTGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-403)

Type II secretion system (T2SS), protein F (T2SSF)

(64-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

60.294

99.029

0.597
  pilC Haemophilus influenzae 86-028NP

60.049

99.029

0.595
  pilC Glaesserella parasuis strain SC1401

40.777

100

0.408