Detailed information NTG0554091

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LZ175_RS21045
• Genome accession: NZ_CP090448
• Coordinates: 4329547..4330572 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain PT62
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4324547..4335572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ175_RS21025 (LZ175_21020)	metJ	4325608..4325925 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LZ175_RS21030 (LZ175_21025)	yiiX	4326109..4326717 (+)	609	WP_000797343.1	YiiX family permuted papain-like enzyme	-
LZ175_RS21035 (LZ175_21030)	rpmE	4326778..4326990 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LZ175_RS21040 (LZ175_21035)	priA	4327193..4329391 (+)	2199	WP_001491430.1	primosomal protein N'	Machinery gene
LZ175_RS21045 (LZ175_21040)	cytR	4329547..4330572 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
LZ175_RS21050 (LZ175_21045)	ftsN	4330664..4331623 (+)	960	WP_000068834.1	cell division protein FtsN	-
LZ175_RS21055 (LZ175_21050)	hslV	4331716..4332246 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LZ175_RS21060 (LZ175_21055)	hslU	4332256..4333587 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
LZ175_RS21065 (LZ175_21060)	menA	4333654..4334580 (+)	927	WP_040063905.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LZ175_RS21070 (LZ175_21065)	rraA	4334673..4335158 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=554091 LZ175_RS21045 WP_000644908.1 4329547..4330572(+) (cytR) [Escherichia coli strain PT62]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=554091 LZ175_RS21045 WP_000644908.1 4329547..4330572(+) (cytR) [Escherichia coli strain PT62]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTAACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAGCAGCTACTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATTGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCACGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625