Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   J7D37_RS08315 Genome accession   NZ_CP072526
Coordinates   1711659..1712039 (+) Length   126 a.a.
NCBI ID   WP_038348264.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1706659..1717039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS08285 (J7D37_08285) kdsB 1707562..1708323 (+) 762 WP_038348267.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J7D37_RS08290 (J7D37_08290) - 1708335..1709315 (+) 981 WP_038348266.1 DNA polymerase III subunit delta' -
  J7D37_RS08295 (J7D37_08295) - 1709327..1709668 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  J7D37_RS08300 (J7D37_08300) - 1709686..1710459 (+) 774 WP_038348265.1 TatD family hydrolase -
  J7D37_RS08305 (J7D37_08305) - 1710497..1711105 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  J7D37_RS08310 (J7D37_08310) - 1711115..1711669 (+) 555 WP_000841373.1 type II secretion system protein -
  J7D37_RS08315 (J7D37_08315) xcpV 1711659..1712039 (+) 381 WP_038348264.1 type II secretion system minor pseudopilin GspI Machinery gene
  J7D37_RS08320 (J7D37_08320) xcpW 1712039..1712740 (+) 702 WP_021510829.1 type II secretion system minor pseudopilin GspJ Machinery gene
  J7D37_RS08325 (J7D37_08325) gspK 1712740..1713699 (+) 960 WP_038348263.1 type II secretion system minor pseudopilin GspK -
  J7D37_RS08330 (J7D37_08330) - 1713929..1714525 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  J7D37_RS08335 (J7D37_08335) ung 1714576..1715289 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  J7D37_RS08340 (J7D37_08340) - 1715286..1716410 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  J7D37_RS08345 (J7D37_08345) tadA 1716417..1716920 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13961.18 Da        Isoelectric Point: 9.8004

>NTDB_id=554035 J7D37_RS08315 WP_038348264.1 1711659..1712039(+) (xcpV) [Acinetobacter baumannii strain DETAB-E227]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEVNQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=554035 J7D37_RS08315 WP_038348264.1 1711659..1712039(+) (xcpV) [Acinetobacter baumannii strain DETAB-E227]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGGTTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992