Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   J7445_RS10915 Genome accession   NZ_CP072524
Coordinates   2311590..2312810 (+) Length   406 a.a.
NCBI ID   WP_209283058.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2306590..2317810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS10900 (J7445_10900) - 2307162..2307755 (+) 594 WP_009312693.1 DUF4390 domain-containing protein -
  J7445_RS10905 (J7445_10905) - 2307759..2309882 (+) 2124 WP_070655265.1 PAS domain-containing sensor histidine kinase -
  J7445_RS10910 (J7445_10910) - 2309875..2311158 (+) 1284 WP_070655260.1 sigma-54 dependent transcriptional regulator -
  J7445_RS10915 (J7445_10915) dprA 2311590..2312810 (+) 1221 WP_209283058.1 DNA-processing protein DprA Machinery gene
  J7445_RS10920 (J7445_10920) - 2312836..2313291 (+) 456 WP_003742632.1 DUF494 family protein -
  J7445_RS10925 (J7445_10925) topA 2313376..2315682 (+) 2307 WP_070655256.1 type I DNA topoisomerase -
  J7445_RS10930 (J7445_10930) - 2315757..2316452 (-) 696 WP_029609880.1 hypothetical protein -
  J7445_RS10935 (J7445_10935) - 2316642..2316863 (-) 222 WP_003742639.1 hypothetical protein -
  J7445_RS10940 (J7445_10940) rsmD 2317134..2317700 (+) 567 WP_070655252.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence


Protein


Download         Length: 406 a.a.        Molecular weight: 43742.00 Da        Isoelectric Point: 6.5897

>NTDB_id=553924 J7445_RS10915 WP_209283058.1 2311590..2312810(+) (dprA) [Neisseria sicca strain NS20201025]
MTENDRLAWLQLAFTPYVGAEGFLLLLQRFGSAKAALDAPAEQIAAVVRHKQAAESWRNGEKRALAQKAAEAALQWETQD
GCRLLLLQDDDFPEMLTQGITAPPVLFLRGNVQLLHKPSAAIVGSRHATPQAMRIAKDFGRALSERDIPVVSGMASGIDT
AAHQGALQAGGSTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPLDTRPFAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAKLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILHECPGLLQNAAVPSYSINKKNKKTEKRTAVR
ETSSEPVLPFSDDLHVRKQPAQANTVAAPTAEDGLLDAMGYDPVHPDILAQQTAWAAADVYARLLEYELDGIVAALPGGR
YQRIKA

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=553924 J7445_RS10915 WP_209283058.1 2311590..2312810(+) (dprA) [Neisseria sicca strain NS20201025]
ATGACGGAAAATGACCGCCTTGCCTGGCTGCAACTGGCGTTTACGCCTTATGTCGGCGCGGAGGGCTTCTTGCTCCTGCT
GCAACGTTTCGGCAGCGCGAAAGCCGCGCTGGATGCTCCGGCGGAACAAATAGCCGCGGTGGTGCGCCACAAGCAGGCAG
CCGAATCTTGGCGCAACGGCGAAAAACGGGCGTTGGCGCAAAAGGCTGCGGAAGCGGCGTTGCAATGGGAAACGCAGGAC
GGCTGCCGTTTGTTGCTGCTGCAAGATGATGATTTTCCCGAAATGCTGACGCAGGGCATTACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCAACTGCTGCACAAACCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTTGGTAGGGCGTTGAGCGAAAGGGATATTCCTGTCGTGTCGGGTATGGCTTCGGGTATAGACACC
GCCGCCCATCAAGGCGCGTTACAGGCGGGCGGCAGTACCATCGCCGTCTGGGGAACGGGCATAGACCGCATTTATCCGCC
GTCCAATAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGTTGATCGTCAGCGAGTTTCCTTTGGATACGCGGCCTTTTG
CGGGCAACTTCCCGCGCCGCAACCGCCTGATCGCTGCATTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCACTGATTACCGCCAAGCTGGCGGCGGAGATGGGGCGGGAGGTGATGGCGGTACCCGGTTCGATAGACAATCCGCA
CAGCAAAGGCTGTCACAAGCTGATTAAAGACGGCGCGAAATTGGTGGAATGTTTGGACGACATCCTTCACGAATGTCCGG
GGCTATTGCAAAATGCGGCAGTTCCATCATATTCTATAAATAAGAAAAACAAAAAAACGGAAAAACGCACTGCCGTCAGA
GAGACGTCGTCTGAACCTGTTTTACCGTTTTCAGACGACCTTCATGTCCGAAAACAGCCGGCGCAAGCCAATACGGTTGC
CGCGCCGACAGCGGAAGACGGGCTGCTGGACGCCATGGGTTACGACCCCGTTCATCCCGATATATTGGCGCAGCAAACCG
CATGGGCGGCGGCAGACGTTTACGCTCGACTGCTGGAATACGAACTCGACGGCATCGTCGCCGCCTTGCCGGGCGGACGC
TATCAGCGCATAAAAGCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

77.833

100

0.778

  dprA Neisseria meningitidis MC58

77.833

100

0.778

  dprA Neisseria gonorrhoeae strain FA1090

75.309

99.754

0.751

  dprA Neisseria gonorrhoeae MS11

75.062

99.754

0.749

  dprA Vibrio cholerae strain A1552

37.624

99.507

0.374