Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J7445_RS08380 Genome accession   NZ_CP072524
Coordinates   1792668..1794164 (+) Length   498 a.a.
NCBI ID   WP_209282979.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1791036..1792001 1792668..1794164 flank 667


Gene organization within MGE regions


Location: 1791036..1794164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS08370 (J7445_08370) - 1791036..1792001 (-) 966 WP_209282978.1 IS30 family transposase -
  J7445_RS08375 (J7445_08375) - 1792334..1792654 (+) 321 WP_016686683.1 accessory factor UbiK family protein -
  J7445_RS08380 (J7445_08380) comM 1792668..1794164 (+) 1497 WP_209282979.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53607.63 Da        Isoelectric Point: 7.3735

>NTDB_id=553915 J7445_RS08380 WP_209282979.1 1792668..1794164(+) (comM) [Neisseria sicca strain NS20201025]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIAPEKLAQYEFAGELALSGMLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTACQVPQRSSENDKLPDLIDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSHRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSAVVLARVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGNLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVLKAVSFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=553915 J7445_RS08380 WP_209282979.1 1792668..1794164(+) (comM) [Neisseria sicca strain NS20201025]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCTCATTTCAACATCGTCGGACTGCCCGACACCGAAGTCAAAGAAAGCCGCGACCGCGTGCGCGCCGCCATCA
TCCAAAGCGGTTTCGACTTCCCAGCCAAAAAAATCACCGTCAACCTAGCCCCTGCCGACCTGCCTAAAGAATCGGGACGT
TTCGACCTGCCGATTGCGTTGGGTATCCTCGCCGCATCCGGACAAATCGCACCCGAAAAGCTCGCGCAATACGAGTTTGC
CGGCGAATTGGCGCTTTCCGGCATGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAGGAC
GCTCTTTCGTCCTGCCGCAGGAAAACGCGGAACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGTGCGCGTTCGTTG
GGTGAAGTCGCTGCCCATTTGAACGGCATCGAACCCTTGGCGCAAACCGCCTGCCAAGTTCCGCAGAGGTCGTCTGAAAA
CGACAAACTGCCCGACCTCATCGATGTCAAAGGTCAACACACCGCCCGCCTTGCTTTGGAAATCGCTGCCGCGGGCGGAC
ACAGCCTCTTAATGATGGGGCCGCCGGGAACGGGCAAATCCATGCTTTCCCAACGGCTGCCCGGCATCCTGCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTATGGGCTTTGCGTTCGCTCCTGCCCAATCATCAGCAACAACTCGACAGCCACCGTCC
TTTCCGCAGCCCGCACCATAGCGCCAGCTCGGCAGCCATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCATCACGGCGTTTTATTTTTGGACGAGCTGCCCGAGTTTGATCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGTCAAGCCGTCTATCCCGCCAAATTTCAGCTTGTCGCCGCCATGAA
CCCTTGTCCTTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGTGTCGCACGTTACCGCAGCA
AAATTTCCGGCCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTTCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGAGAAAGCAGCGCCGTCGTGTTGGCGCGCGTGATCGCCGCCCGCGACAAACAATACGCGCGGCAAGGCAAAGT
GAATGCCGCCTTGAGCGTCAGTGAACTCGACACGTCCGCACGCATCCAAAAAGAAGCGCAGGAAGCCTTGGGCAACCTGT
TGGAAAAACTTTCACTCTCCGCCCGCAGTTTCCACCGCATCATGCGCGTGGCGCGTACGCTGGCAGATTTGGCGGGAGAT
GAAGAAGTCGGCAGAAGCCACGTTTTGAAAGCCGTCAGCTTCCGCCGCGCGTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

52.6

100

0.528
  comM Glaesserella parasuis strain SC1401

49.602

100

0.5
  comM Haemophilus influenzae Rd KW20

49.203

100

0.496
  comM Legionella pneumophila str. Paris

47.316

100

0.478
  comM Legionella pneumophila strain ERS1305867

47.316

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.539

100

0.44