Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J6836_RS19985 Genome accession   NZ_CP072453
Coordinates   4298096..4298614 (+) Length   172 a.a.
NCBI ID   WP_219245579.1    Uniprot ID   -
Organism   Providencia sp. R33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4293096..4303614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6836_RS19975 (J6836_19980) - 4293413..4294609 (+) 1197 WP_206086319.1 amino acid aminotransferase -
  J6836_RS19980 (J6836_19985) uvrA 4294819..4297653 (-) 2835 WP_219245578.1 excinuclease ABC subunit UvrA -
  J6836_RS19985 (J6836_19990) ssb 4298096..4298614 (+) 519 WP_219245579.1 single-stranded DNA-binding protein Machinery gene
  J6836_RS19990 (J6836_19995) - 4298873..4299280 (-) 408 WP_219245580.1 helix-turn-helix domain-containing protein -
  J6836_RS19995 (J6836_20000) - 4299534..4300703 (-) 1170 WP_219245581.1 MFS transporter -
  J6836_RS20000 (J6836_20005) ivbL 4301040..4301129 (+) 90 WP_219249565.1 ilvB operon leader peptide IvbL -
  J6836_RS20005 (J6836_20010) ilvB 4301233..4302930 (+) 1698 WP_219249567.1 acetolactate synthase large subunit -
  J6836_RS20010 (J6836_20015) ilvN 4302933..4303217 (+) 285 WP_047756595.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18608.62 Da        Isoelectric Point: 4.9468

>NTDB_id=553513 J6836_RS19985 WP_219245579.1 4298096..4298614(+) (ssb) [Providencia sp. R33]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTNEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQSQGGQGGWGQPQQPQAAQQFSGGGAPARSQAPAPQTN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=553513 J6836_RS19985 WP_219245579.1 4298096..4298614(+) (ssb) [Providencia sp. R33]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGGCAAGATCCTGAAATCCGTTATATGCCTAACGG
CGGAGCGGTGGCAAACCTGACTCTGGCAACTTCTGAAAGCTGGCGCGACAAGCAAACTAACGAGATGCGCGAAAAAACAG
AATGGCATCGCGTGGTAATTTTCGGCAAATTAGCTGAAGTTGCAGGTGAATACCTGAAAAAAGGATCACAAGTCTATATC
GAAGGTTCTTTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACACAACCGAAGTGGTTGTGAACATTGG
CGGTTCAATGCAAATGTTAGGTGGTCGCGGCGGTGATGCACCATCACAAAGTCAGGGTGGTCAAGGTGGTTGGGGTCAAC
CTCAGCAACCACAGGCGGCACAACAATTCAGTGGCGGCGGCGCACCAGCACGCTCACAAGCACCAGCTCCACAAACTAAT
GAACCGCCAATGGATTTCGATGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.508

100

0.744
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.61
  ssb Neisseria meningitidis MC58

46.409

100

0.488
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.465
  ssb Latilactobacillus sakei subsp. sakei 23K

36.111

100

0.378