Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   J7U05_RS07740 Genome accession   NZ_CP072443
Coordinates   1490787..1492940 (-) Length   717 a.a.
NCBI ID   WP_162877223.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24724     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1443213..1516010 1490787..1492940 within 0


Gene organization within MGE regions


Location: 1443213..1516010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U05_RS07475 (J7U05_07455) - 1444104..1444655 (-) 552 WP_002946999.1 cysteine hydrolase family protein -
  J7U05_RS07480 (J7U05_07460) codY 1444718..1445503 (-) 786 WP_002951720.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  J7U05_RS07485 (J7U05_07465) - 1445763..1446977 (-) 1215 WP_011226456.1 pyridoxal phosphate-dependent aminotransferase -
  J7U05_RS07490 (J7U05_07470) - 1447332..1447784 (+) 453 WP_002946987.1 universal stress protein -
  J7U05_RS07495 (J7U05_07475) - 1447964..1448535 (+) 572 Protein_1422 IS30 family transposase -
  J7U05_RS07500 (J7U05_07480) - 1448607..1448780 (-) 174 WP_011681546.1 hypothetical protein -
  J7U05_RS07505 (J7U05_07485) - 1448841..1449215 (-) 375 WP_011681547.1 membrane protein -
  J7U05_RS07510 (J7U05_07490) pflA 1449427..1450227 (-) 801 WP_002946980.1 pyruvate formate-lyase-activating protein -
  J7U05_RS07515 (J7U05_07495) - 1450415..1450525 (-) 111 WP_014621906.1 LPXTG cell wall anchor domain-containing protein -
  J7U05_RS07520 (J7U05_07500) - 1451223..1452554 (-) 1332 WP_002951727.1 hemolysin family protein -
  J7U05_RS07525 (J7U05_07505) - 1452667..1453449 (+) 783 WP_116920343.1 ABC transporter ATP-binding protein -
  J7U05_RS07530 (J7U05_07510) - 1454068..1456134 (-) 2067 WP_116920344.1 sodium:proton antiporter -
  J7U05_RS07535 (J7U05_07515) - 1456143..1456385 (-) 243 WP_011226461.1 hypothetical protein -
  J7U05_RS07540 (J7U05_07520) - 1456382..1456930 (-) 549 WP_011226462.1 class I SAM-dependent methyltransferase -
  J7U05_RS07545 (J7U05_07525) - 1456927..1457871 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  J7U05_RS07550 (J7U05_07530) sepM 1457956..1459032 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  J7U05_RS07555 (J7U05_07535) coaD 1459010..1459507 (-) 498 WP_116920345.1 pantetheine-phosphate adenylyltransferase -
  J7U05_RS07560 (J7U05_07540) rsmD 1459541..1460140 (-) 600 Protein_1435 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  J7U05_RS07565 (J7U05_07545) trxB 1460231..1461184 (-) 954 WP_259700003.1 thioredoxin-disulfide reductase -
  J7U05_RS07570 (J7U05_07550) - 1461217..1461441 (-) 225 WP_084829068.1 DUF4059 family protein -
  J7U05_RS07575 (J7U05_07555) - 1461656..1462399 (-) 744 WP_116920347.1 amino acid ABC transporter ATP-binding protein -
  J7U05_RS07580 (J7U05_07560) - 1462399..1463145 (-) 747 WP_100284797.1 amino acid ABC transporter permease -
  J7U05_RS07585 (J7U05_07565) - 1463533..1464363 (-) 831 WP_116920348.1 transporter substrate-binding domain-containing protein -
  J7U05_RS07590 - 1464540..1464665 (-) 126 WP_259699998.1 hypothetical protein -
  J7U05_RS07595 (J7U05_07570) - 1464823..1465056 (-) 234 WP_002947030.1 hypothetical protein -
  J7U05_RS07600 (J7U05_07575) dinB 1465354..1466457 (-) 1104 WP_014608654.1 DNA polymerase IV -
  J7U05_RS07605 (J7U05_07580) pflB 1466737..1469046 (+) 2310 WP_011226473.1 formate C-acetyltransferase -
  J7U05_RS07610 (J7U05_07585) - 1469313..1470095 (+) 783 WP_011681555.1 carbonic anhydrase -
  J7U05_RS07615 (J7U05_07590) - 1470146..1470598 (+) 453 WP_116920397.1 GNAT family N-acetyltransferase -
  J7U05_RS07620 (J7U05_07595) - 1470949..1471254 (-) 306 WP_014621914.1 restriction endonuclease subunit S -
  J7U05_RS07625 (J7U05_07600) mobV 1471279..1471787 (-) 509 Protein_1448 MobV family relaxase -
  J7U05_RS07630 (J7U05_07605) fetB 1472232..1472987 (-) 756 WP_011681558.1 iron export ABC transporter permease subunit FetB -
  J7U05_RS07635 (J7U05_07610) - 1472984..1473634 (-) 651 WP_011681559.1 ATP-binding cassette domain-containing protein -
  J7U05_RS07640 (J7U05_07615) - 1473837..1474793 (-) 957 WP_002951776.1 serine hydrolase domain-containing protein -
  J7U05_RS07645 (J7U05_07620) - 1474793..1475548 (-) 756 WP_011681560.1 CppA family protein -
  J7U05_RS07650 (J7U05_07625) - 1475830..1476192 (+) 363 WP_014608659.1 CPBP family intramembrane glutamic endopeptidase -
  J7U05_RS07655 (J7U05_07630) gla 1476279..1477142 (-) 864 WP_002951781.1 aquaglyceroporin Gla -
  J7U05_RS07660 (J7U05_07635) - 1477263..1479530 (+) 2268 WP_116920349.1 Xaa-Pro dipeptidyl-peptidase -
  J7U05_RS07665 (J7U05_07640) - 1479610..1479990 (-) 381 WP_002951783.1 hypothetical protein -
  J7U05_RS07670 (J7U05_07645) - 1480115..1480378 (-) 264 WP_002945924.1 hypothetical protein -
  J7U05_RS07675 (J7U05_07650) - 1480700..1480996 (-) 297 WP_004197070.1 bacteriocin immunity protein -
  J7U05_RS07680 (J7U05_07655) - 1481161..1481367 (-) 207 WP_011681562.1 hypothetical protein -
  J7U05_RS07685 (J7U05_07660) - 1481398..1482087 (-) 690 WP_011681563.1 thioredoxin family protein -
  J7U05_RS07690 (J7U05_07665) - 1482281..1483850 (+) 1570 WP_076611955.1 IS3-like element ISSth1b family transposase -
  J7U05_RS07695 (J7U05_07670) - 1483996..1484250 (-) 255 WP_014608660.1 Blp family class II bacteriocin -
  J7U05_RS07700 - 1484501..1484902 (-) 402 WP_024703992.1 hypothetical protein -
  J7U05_RS07705 (J7U05_07675) - 1485907..1486137 (-) 231 WP_014608662.1 bacteriocin class II family protein -
  J7U05_RS07710 (J7U05_07680) - 1486493..1486693 (-) 201 WP_011681569.1 hypothetical protein -
  J7U05_RS07715 (J7U05_07685) - 1486712..1486888 (-) 177 WP_011681570.1 Blp family class II bacteriocin -
  J7U05_RS07720 (J7U05_07690) - 1487139..1487876 (+) 738 WP_011681571.1 LytTR family DNA-binding domain-containing protein -
  J7U05_RS07725 - 1488407..1489210 (+) 804 WP_223899638.1 ATP-binding protein -
  J7U05_RS07730 (J7U05_07700) - 1489228..1489389 (-) 162 WP_011681573.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  J7U05_RS07735 (J7U05_07705) - 1489404..1490771 (-) 1368 WP_011681574.1 bacteriocin secretion accessory protein -
  J7U05_RS07740 (J7U05_07710) comA/nlmT 1490787..1492940 (-) 2154 WP_162877223.1 peptide cleavage/export ABC transporter Regulator
  J7U05_RS07745 (J7U05_07715) - 1493954..1495699 (-) 1746 WP_116920351.1 ABC transporter ATP-binding protein -
  J7U05_RS07750 (J7U05_07720) - 1495692..1497449 (-) 1758 WP_014608668.1 ABC transporter ATP-binding protein -
  J7U05_RS07755 - 1497637..1497843 (-) 207 WP_002948879.1 hypothetical protein -
  J7U05_RS07760 (J7U05_07730) - 1498048..1498575 (-) 528 WP_002951814.1 VanZ family protein -
  J7U05_RS07765 (J7U05_07735) rlmN 1498577..1499686 (-) 1110 WP_100262375.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  J7U05_RS07770 (J7U05_07740) - 1499750..1500472 (-) 723 WP_014621927.1 YutD family protein -
  J7U05_RS07775 (J7U05_07745) - 1500527..1501882 (-) 1356 WP_041827845.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  J7U05_RS07780 (J7U05_07750) - 1502165..1502401 (-) 237 WP_171815042.1 Blp family class II bacteriocin -
  J7U05_RS07785 (J7U05_07755) - 1502730..1504073 (-) 1344 WP_011681583.1 DEAD/DEAH box helicase -
  J7U05_RS07790 (J7U05_07760) mraY 1504148..1505170 (-) 1023 WP_011227524.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  J7U05_RS07795 (J7U05_07765) pbp2X 1505172..1507439 (-) 2268 WP_116920352.1 penicillin-binding protein PBP2X -
  J7U05_RS07800 (J7U05_07770) ftsL 1507443..1507763 (-) 321 WP_014608671.1 cell division protein FtsL -
  J7U05_RS07805 (J7U05_07775) rsmH 1507766..1508716 (-) 951 WP_002888254.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  J7U05_RS07810 (J7U05_07780) - 1508883..1509614 (-) 732 WP_224103288.1 hypothetical protein -
  J7U05_RS07815 (J7U05_07790) - 1509943..1510206 (+) 264 WP_162877224.1 hypothetical protein -
  J7U05_RS07820 (J7U05_07795) - 1510512..1510868 (-) 357 WP_023909925.1 DUF805 domain-containing protein -
  J7U05_RS07825 (J7U05_07800) - 1511217..1511384 (-) 168 WP_153300736.1 hypothetical protein -
  J7U05_RS07830 (J7U05_07805) - 1511717..1512967 (-) 1251 WP_014608675.1 glutamate-5-semialdehyde dehydrogenase -
  J7U05_RS07835 (J7U05_07810) proB 1512969..1513772 (-) 804 WP_014608676.1 glutamate 5-kinase -
  J7U05_RS07840 (J7U05_07815) - 1513893..1515482 (-) 1590 WP_014608677.1 ABC transporter permease -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80601.42 Da        Isoelectric Point: 6.8332

>NTDB_id=553412 J7U05_RS07740 WP_162877223.1 1490787..1492940(-) (comA/nlmT) [Streptococcus thermophilus strain S24724]
MFRFRRTFVPQIDMRDCGVAALASVAKYYGSDYSLAHLRELAKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLFEMEDV
PYPFIAHVNKDGKLQHYYVIYKSTKDYLIIGDPDPSVKVTKMTKERFEKEWTGVTLFMGPEPSYKPHKDKKNGLWDFLPL
IFKQRSLIANIVFASLLVTLINILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQRLTID
VILSYIRHIFELPMSFFATRRTGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSVPIYTL
IVFAFMKPFERMNHDVMQSNAMVNSAIIEDINGIETIKSLTSEEVCYQKIDGEFIDYLDNSFRLSKLSILQTSLKQGAQL
ILNVLILWTGAQLVMGNTISIGQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTYQEGIA
DGDITVTDLSYKYGFGRDTLTDVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGHIDFNGQNISRIDKKTLRQHI
NYLPQQSYIFSGSVLENLTLGAARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALARALLTKSP
VLILDEATSGLDVLTEKQVIDNLLALKDKTIIFVAHRLSIAERTDRIVVIDQGRVVETGSHQDLMSYPGFYYQLFRK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=553412 J7U05_RS07740 WP_162877223.1 1490787..1492940(-) (comA/nlmT) [Streptococcus thermophilus strain S24724]
ATGTTTCGTTTTCGTAGGACTTTTGTCCCTCAAATAGACATGAGGGATTGTGGAGTTGCTGCCTTGGCATCAGTGGCCAA
GTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGCGAAGACCAATAAAGAAGGGACAACTGCCTTAGGTC
TTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCTTTGAGATGGAAGATGTT
CCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTATAAAAGCACCAAGGATTA
TCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGAGAAAGAGTGGACAGGTG
TTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCTGGGACTTTCTCCCTTTG
ATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCCAGTCTCTTGGTTACTTTAATAAATATTTTAGGTTCCTA
TTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTATCTCAATTGGATTAGTTG
TGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTCAGCGATTGACCATTGAC
GTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGTACAGGGGAGGTTATCTC
ACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCTTGATTTCTCTATTGTGA
TTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGGTTCCAATTTATACCCTT
ATCGTCTTTGCCTTTATGAAACCTTTTGAGCGAATGAATCATGACGTCATGCAGAGTAATGCTATGGTTAATTCAGCCAT
CATTGAGGACATTAATGGGATTGAAACCATAAAGTCACTAACCAGCGAAGAAGTATGCTATCAAAAGATTGATGGTGAGT
TTATTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGAAACAAGGTGCTCAACTT
ATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATAGGACAATTGATTACTTT
TAATATGTTGCTTTCTTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTTACAGTCTGCTAAGGTAG
CTAATACTAGGCTCAATGAGGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCTATCAAGAAGGCATTGCG
GATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACTGATGTCAGTTTGACGAT
TAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAAAATGTTGGTCAATTTTT
ATCAACCATATAAGGGGCACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAACTCTTCGTCAACATATT
AACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGTGCAGCACGGGGTATTAC
GCAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCCTATGGGGTTTCAGACAG
AGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGCGCGTGCACTACTAACGAAATCTCCT
GTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGATAACCTCCTAGCACTAAA
AGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGACCGTATCGTAGTCATTGATCAGGGAC
GCGTAGTGGAGACAGGTTCTCATCAAGACCTAATGTCTTATCCAGGTTTCTATTATCAATTATTTAGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

68.067

99.582

0.678

  comA Streptococcus mitis NCTC 12261

66.385

99.163

0.658

  comA Streptococcus pneumoniae Rx1

65.963

99.163

0.654

  comA Streptococcus pneumoniae D39

65.963

99.163

0.654

  comA Streptococcus pneumoniae R6

65.963

99.163

0.654

  comA Streptococcus mitis SK321

65.682

99.163

0.651

  comA Streptococcus pneumoniae TIGR4

65.541

99.163

0.65

  comA Streptococcus gordonii str. Challis substr. CH1

64.286

99.582

0.64