Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7T61_RS08825 Genome accession   NZ_CP072441
Coordinates   1682776..1683732 (-) Length   318 a.a.
NCBI ID   WP_084831205.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24728     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1677776..1688732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T61_RS08795 (J7T61_08730) proC 1678337..1679107 (+) 771 WP_101415708.1 pyrroline-5-carboxylate reductase -
  J7T61_RS08800 (J7T61_08735) - 1679137..1679799 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  J7T61_RS08805 (J7T61_08740) - 1679896..1680339 (-) 444 WP_041829335.1 hypothetical protein -
  J7T61_RS08810 - 1680413..1680751 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  J7T61_RS08815 (J7T61_08750) - 1681081..1681278 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7T61_RS08820 (J7T61_08755) - 1681527..1682720 (-) 1194 WP_372429425.1 acetate kinase -
  J7T61_RS08825 (J7T61_08760) comYH 1682776..1683732 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  J7T61_RS08830 (J7T61_08765) comGG 1683777..1684094 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  J7T61_RS08835 (J7T61_08770) comYF 1684072..1684509 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7T61_RS08840 (J7T61_08775) comGE 1684493..1684786 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  J7T61_RS08845 (J7T61_08780) comYD 1684758..1685186 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7T61_RS08850 (J7T61_08785) comYC 1685146..1685472 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7T61_RS08855 (J7T61_08790) comGB 1685469..1686568 (-) 1100 Protein_1687 competence type IV pilus assembly protein ComGB -
  J7T61_RS08860 (J7T61_08795) comGA/cglA/cilD 1686450..1687391 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  J7T61_RS08865 (J7T61_08800) - 1687472..1687834 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35871.03 Da        Isoelectric Point: 4.7123

>NTDB_id=553301 J7T61_RS08825 WP_084831205.1 1682776..1683732(-) (comYH) [Streptococcus thermophilus strain S24728]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=553301 J7T61_RS08825 WP_084831205.1 1682776..1683732(-) (comYH) [Streptococcus thermophilus strain S24728]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.524

99.057

0.689
  comYH Streptococcus mutans UA140

69.524

99.057

0.689