Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   LV497_RS06680 Genome accession   NZ_CP090007
Coordinates   1455093..1455755 (+) Length   220 a.a.
NCBI ID   WP_002883740.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1450093..1460755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS06655 (LV497_06655) - 1450400..1451110 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  LV497_RS06660 (LV497_06660) - 1451245..1451904 (+) 660 WP_245084274.1 CBS and ACT domain-containing protein -
  LV497_RS06665 (LV497_06665) cysK 1452084..1453010 (-) 927 WP_002883742.1 cysteine synthase A -
  LV497_RS06670 (LV497_06670) - 1453112..1453738 (-) 627 WP_038675335.1 YigZ family protein -
  LV497_RS06675 (LV497_06675) comFA/cflA 1453793..1455112 (+) 1320 WP_245084277.1 DEAD/DEAH box helicase Machinery gene
  LV497_RS06680 (LV497_06680) comFC/cflB 1455093..1455755 (+) 663 WP_002883740.1 ComF family protein Machinery gene
  LV497_RS06685 (LV497_06685) raiA 1455834..1456382 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26191.45 Da        Isoelectric Point: 8.7453

>NTDB_id=553049 LV497_RS06680 WP_002883740.1 1455093..1455755(+) (comFC/cflB) [Streptococcus salivarius strain SALI-10]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKRFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=553049 LV497_RS06680 WP_002883740.1 1455093..1455755(+) (comFC/cflB) [Streptococcus salivarius strain SALI-10]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAAAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAATTTAAAACGATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGGT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGTGAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45