Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   J7T60_RS06690 Genome accession   NZ_CP072436
Coordinates   1279074..1281044 (-) Length   656 a.a.
NCBI ID   WP_372433410.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1259041..1326107 1279074..1281044 within 0


Gene organization within MGE regions


Location: 1259041..1326107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS06595 (J7T60_06540) liaF 1259049..1259747 (-) 699 WP_011226289.1 cell wall-active antibiotics response protein LiaF -
  J7T60_RS06600 - 1260002..1260169 (-) 168 WP_224103618.1 potassium channel family protein -
  J7T60_RS06605 (J7T60_06550) stkP/pknB 1260806..1262677 (-) 1872 WP_372433404.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  J7T60_RS06610 (J7T60_06555) - 1262677..1263414 (-) 738 WP_002946881.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  J7T60_RS06615 (J7T60_06560) rsmB 1263458..1264780 (-) 1323 WP_372433405.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J7T60_RS06620 (J7T60_06565) fmt 1264770..1265705 (-) 936 WP_065972439.1 methionyl-tRNA formyltransferase -
  J7T60_RS06625 (J7T60_06570) - 1265723..1268119 (-) 2397 WP_372433406.1 primosomal protein N' -
  J7T60_RS06630 (J7T60_06575) rpoZ 1268261..1268575 (-) 315 WP_002951415.1 DNA-directed RNA polymerase subunit omega -
  J7T60_RS06635 (J7T60_06580) gmk 1268597..1269226 (-) 630 WP_002951416.1 guanylate kinase -
  J7T60_RS06640 (J7T60_06585) ftsY 1269459..1270850 (-) 1392 WP_372433407.1 signal recognition particle-docking protein FtsY -
  J7T60_RS06645 (J7T60_06590) - 1270864..1271679 (-) 816 WP_011226298.1 Cof-type HAD-IIB family hydrolase -
  J7T60_RS06650 (J7T60_06595) - 1271672..1272466 (-) 795 WP_372433408.1 HAD-IIB family hydrolase -
  J7T60_RS06655 (J7T60_06600) - 1272650..1273027 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7T60_RS06660 (J7T60_06605) - 1273032..1273730 (+) 699 WP_372433409.1 ABC transporter ATP-binding protein -
  J7T60_RS06665 (J7T60_06610) - 1273742..1274527 (+) 786 WP_011681414.1 hypothetical protein -
  J7T60_RS06670 (J7T60_06615) amiF 1274577..1275506 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  J7T60_RS06675 (J7T60_06620) amiE 1275499..1276584 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7T60_RS06680 (J7T60_06625) amiD 1276594..1277520 (-) 927 WP_271295774.1 oligopeptide ABC transporter permease OppC Regulator
  J7T60_RS06685 (J7T60_06630) amiC 1277520..1279013 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  J7T60_RS06690 (J7T60_06635) amiA3 1279074..1281044 (-) 1971 WP_372433410.1 peptide ABC transporter substrate-binding protein Regulator
  J7T60_RS06695 (J7T60_06640) - 1281280..1281470 (-) 191 Protein_1264 IS3 family transposase -
  J7T60_RS06700 - 1281464..1281874 (-) 411 Protein_1265 ATP-binding cassette domain-containing protein -
  J7T60_RS06705 (J7T60_06655) - 1281906..1282220 (-) 315 Protein_1266 TatD family hydrolase -
  J7T60_RS06710 (J7T60_06660) - 1282568..1283773 (+) 1206 WP_372433411.1 OFA family MFS transporter -
  J7T60_RS06715 (J7T60_06665) - 1283820..1285172 (-) 1353 Protein_1268 IS3 family transposase -
  J7T60_RS06720 (J7T60_06670) pta 1285258..1286241 (-) 984 WP_011227420.1 phosphate acetyltransferase -
  J7T60_RS06725 (J7T60_06675) - 1286255..1287151 (-) 897 WP_011226316.1 RluA family pseudouridine synthase -
  J7T60_RS06730 (J7T60_06680) - 1287148..1287984 (-) 837 WP_260214141.1 NAD kinase -
  J7T60_RS06735 (J7T60_06685) - 1287956..1288630 (-) 675 WP_002951443.1 GTP pyrophosphokinase family protein -
  J7T60_RS06740 (J7T60_06690) - 1288726..1289301 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  J7T60_RS06745 (J7T60_06695) - 1289664..1290635 (+) 972 WP_011681428.1 ribose-phosphate diphosphokinase -
  J7T60_RS06750 (J7T60_06700) - 1290639..1291751 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  J7T60_RS06755 (J7T60_06705) - 1291753..1292100 (+) 348 WP_002948028.1 DUF1831 domain-containing protein -
  J7T60_RS06760 (J7T60_06710) - 1292244..1292903 (+) 660 WP_116920318.1 redox-sensing transcriptional repressor Rex -
  J7T60_RS06765 (J7T60_06715) - 1292896..1293591 (+) 696 WP_116920319.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  J7T60_RS06770 (J7T60_06720) radC 1293644..1294330 (-) 687 WP_011681432.1 DNA repair protein RadC -
  J7T60_RS06775 (J7T60_06725) - 1294376..1295932 (-) 1557 WP_372433412.1 hypothetical protein -
  J7T60_RS06780 (J7T60_06730) - 1296015..1297271 (-) 1257 WP_084826083.1 hypothetical protein -
  J7T60_RS06785 (J7T60_06735) - 1297346..1299130 (-) 1785 WP_220016414.1 rhamnan synthesis F family protein -
  J7T60_RS06790 (J7T60_06740) - 1299127..1300182 (-) 1056 WP_084829757.1 glycosyltransferase -
  J7T60_RS06795 (J7T60_06745) - 1300202..1301407 (-) 1206 WP_014727633.1 ABC transporter ATP-binding protein -
  J7T60_RS06800 (J7T60_06750) - 1301407..1302216 (-) 810 WP_024703948.1 ABC transporter permease -
  J7T60_RS06805 (J7T60_06755) - 1302200..1303156 (-) 957 WP_100262334.1 glycosyltransferase family 2 protein -
  J7T60_RS06810 (J7T60_06760) cps2T 1303153..1304301 (-) 1149 WP_084830746.1 beta 1-4 rhamnosyltransferase Cps2T -
  J7T60_RS06815 (J7T60_06765) - 1304530..1305687 (+) 1158 Protein_1288 ISL3 family transposase -
  J7T60_RS06820 (J7T60_06770) rfbD 1305731..1306582 (-) 852 WP_372433413.1 dTDP-4-dehydrorhamnose reductase -
  J7T60_RS06825 (J7T60_06775) - 1306659..1307993 (-) 1335 WP_372433414.1 DUF6056 family protein -
  J7T60_RS06830 (J7T60_06780) - 1308075..1309549 (-) 1475 Protein_1291 glucosyltransferase domain-containing protein -
  J7T60_RS06835 (J7T60_06785) - 1309552..1310478 (-) 927 WP_084826090.1 glycosyltransferase family 2 protein -
  J7T60_RS06840 (J7T60_06790) - 1310488..1310823 (-) 336 WP_002891474.1 metal-sulfur cluster assembly factor -
  J7T60_RS06845 (J7T60_06795) rpoD 1310877..1311986 (-) 1110 WP_011226338.1 RNA polymerase sigma factor RpoD -
  J7T60_RS06850 (J7T60_06800) dnaG 1311990..1313801 (-) 1812 WP_179970984.1 DNA primase -
  J7T60_RS06855 (J7T60_06805) mscL 1313944..1314024 (+) 81 Protein_1296 large conductance mechanosensitive channel protein MscL -
  J7T60_RS06860 (J7T60_06810) rpsU 1314184..1314360 (-) 177 WP_179970985.1 30S ribosomal protein S21 -
  J7T60_RS06865 (J7T60_06815) - 1314555..1315349 (-) 795 WP_023909836.1 ABC transporter substrate-binding protein -
  J7T60_RS06870 (J7T60_06820) - 1315442..1316551 (-) 1110 WP_179970986.1 aminotransferase -
  J7T60_RS06875 (J7T60_06825) - 1316898..1317695 (-) 798 WP_179970987.1 transporter substrate-binding domain-containing protein -
  J7T60_RS06880 (J7T60_06830) - 1317692..1318522 (-) 831 WP_022097022.1 transporter substrate-binding domain-containing protein -
  J7T60_RS06885 (J7T60_06835) - 1318736..1319200 (-) 465 WP_011226345.1 8-oxo-dGTP diphosphatase -
  J7T60_RS06890 (J7T60_06840) uvrB 1319245..1321236 (-) 1992 WP_002953358.1 excinuclease ABC subunit UvrB -
  J7T60_RS06895 (J7T60_06845) - 1321383..1321850 (-) 468 WP_372433415.1 hypothetical protein -
  J7T60_RS06900 (J7T60_06850) - 1321923..1322860 (-) 938 Protein_1305 CPBP family intramembrane glutamic endopeptidase -
  J7T60_RS06905 (J7T60_06855) - 1323059..1325269 (+) 2211 WP_014621834.1 ABC transporter substrate-binding protein/permease -
  J7T60_RS06910 (J7T60_06860) - 1325269..1326009 (+) 741 WP_002945131.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72276.31 Da        Isoelectric Point: 5.1026

>NTDB_id=552998 J7T60_RS06690 WP_372433410.1 1279074..1281044(-) (amiA3) [Streptococcus thermophilus strain S24735]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAVDSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVDQSSKLNVAQVQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATLNAANAAAEDWDISNSVAWAPDYQDPSTYLDIFKTTSSENTKDFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASIQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=552998 J7T60_RS06690 WP_372433410.1 1279074..1281044(-) (amiA3) [Streptococcus thermophilus strain S24735]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGATTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGTGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGAAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAGGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGCTCTAAACTTAATGTTGCCCAAGTCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGATTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTTAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

98.478

100

0.986
  amiA3 Streptococcus thermophilus LMG 18311

98.174

100

0.983
  amiA Streptococcus salivarius strain HSISS4

91.159

100

0.912