Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LV497_RS03120 Genome accession   NZ_CP090007
Coordinates   761699..762484 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 756699..767484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS03100 (LV497_03100) - 757198..758079 (-) 882 WP_021147408.1 glycosyltransferase family 2 protein -
  LV497_RS03105 (LV497_03105) - 758083..759291 (-) 1209 WP_245085256.1 glycosyltransferase family 8 protein -
  LV497_RS03110 (LV497_03110) - 759486..760925 (-) 1440 WP_022496408.1 6-phospho-beta-glucosidase -
  LV497_RS03115 (LV497_03115) - 761082..761633 (-) 552 WP_037611919.1 cysteine hydrolase family protein -
  LV497_RS03120 (LV497_03120) codY 761699..762484 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LV497_RS03125 (LV497_03125) - 762750..763964 (-) 1215 WP_155222577.1 pyridoxal phosphate-dependent aminotransferase -
  LV497_RS03130 (LV497_03130) - 764324..764776 (+) 453 WP_002891687.1 universal stress protein -
  LV497_RS03135 (LV497_03135) - 764855..765607 (-) 753 WP_022496404.1 hypothetical protein -
  LV497_RS03140 (LV497_03140) pflA 765677..766477 (-) 801 WP_021143691.1 pyruvate formate-lyase-activating protein -
  LV497_RS03145 (LV497_03145) - 766664..767392 (-) 729 WP_022495913.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=552997 LV497_RS03120 WP_002884784.1 761699..762484(-) (codY) [Streptococcus salivarius strain SALI-10]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=552997 LV497_RS03120 WP_002884784.1 761699..762484(-) (codY) [Streptococcus salivarius strain SALI-10]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTGGATAGCTTGGAAGGCGATCTTCC
ATATAACAACATGGCTGCTCAGTTAGCAGATATCATTGATTGTAATGCTGCTATCGTCAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAATACAAAACCAACAATGACCGTGTAGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAGGAATATACT
CGTGGTATTAGTCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAATCAAA
AGATGATTTCCCAGACGGTTTGACTACAATTGCACCTATCTATGGTGGTGGTATGCGTCTCGGTTCTTTCATTATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTTGTTGGTTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATCAACATGGCAATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502