Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J7U00_RS08475 Genome accession   NZ_CP072431
Coordinates   1624931..1625140 (-) Length   69 a.a.
NCBI ID   WP_002946147.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24745     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1619931..1630140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U00_RS08440 (J7U00_08410) - 1620930..1621241 (-) 312 WP_002886559.1 urease subunit beta -
  J7U00_RS08445 (J7U00_08415) - 1621253..1621555 (-) 303 WP_002886558.1 urease subunit gamma -
  J7U00_RS08450 (J7U00_08420) - 1621580..1622095 (-) 516 WP_002949547.1 AmiS/UreI family transporter -
  J7U00_RS08455 - 1622500..1623396 (+) 897 WP_224102957.1 urease cluster protein -
  J7U00_RS08460 - 1623636..1623920 (+) 285 WP_014727318.1 hypothetical protein -
  J7U00_RS08465 (J7U00_08430) - 1623883..1624200 (-) 318 WP_011225454.1 DUF805 domain-containing protein -
  J7U00_RS08470 (J7U00_08435) - 1624308..1624876 (-) 569 Protein_1662 ATP-binding cassette domain-containing protein -
  J7U00_RS08475 comA 1624931..1625140 (-) 210 WP_002946147.1 hypothetical protein Regulator
  J7U00_RS08480 - 1625162..1625878 (-) 717 Protein_1664 ABC transporter transmembrane domain-containing protein -
  J7U00_RS08485 - 1625908..1626402 (-) 495 Protein_1665 cysteine peptidase family C39 domain-containing protein -
  J7U00_RS08490 (J7U00_08460) comR 1626577..1627476 (-) 900 WP_014607953.1 helix-turn-helix domain-containing protein Regulator
  J7U00_RS08495 (J7U00_08465) - 1627671..1628321 (-) 651 WP_011225447.1 phosphatase PAP2 family protein -
  J7U00_RS08500 (J7U00_08470) - 1628324..1628881 (-) 558 WP_002949523.1 ECF transporter S component -
  J7U00_RS08505 (J7U00_08475) - 1629193..1629702 (-) 510 WP_014607952.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 8157.54 Da        Isoelectric Point: 9.7339

>NTDB_id=552768 J7U00_RS08475 WP_002946147.1 1624931..1625140(-) (comA) [Streptococcus thermophilus strain S24745]
MITYSMLLNYFTTPLINIIYLQSKIQQAKVANNCLQEVYVVNKEEKGQLKDLSFKQLDLKGVSHRFRYQ

Nucleotide


Download         Length: 210 bp        

>NTDB_id=552768 J7U00_RS08475 WP_002946147.1 1624931..1625140(-) (comA) [Streptococcus thermophilus strain S24745]
TTGATTACCTATAGTATGTTGCTTAATTATTTTACGACTCCTTTAATTAATATTATCTATCTTCAATCTAAGATTCAGCA
AGCCAAGGTAGCCAATAATTGTCTTCAAGAAGTTTATGTTGTGAATAAGGAAGAAAAAGGTCAACTCAAAGATTTATCCT
TTAAACAATTAGACTTAAAAGGTGTTAGTCATCGTTTCAGATACCAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

54.167

100

0.565
  comA Streptococcus mitis NCTC 12261

52.778

100

0.551
  comA Streptococcus pneumoniae Rx1

51.389

100

0.536
  comA Streptococcus pneumoniae D39

51.389

100

0.536
  comA Streptococcus pneumoniae R6

51.389

100

0.536
  comA Streptococcus pneumoniae TIGR4

51.389

100

0.536
  comA Streptococcus mitis SK321

50

100

0.522
  comA/nlmT Streptococcus mutans UA159

44.286

100

0.449