Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   J7T77_RS06815 Genome accession   NZ_CP072430
Coordinates   1307863..1309836 (-) Length   657 a.a.
NCBI ID   WP_372589652.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24746     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1287840..1355861 1307863..1309836 within 0


Gene organization within MGE regions


Location: 1287840..1355861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T77_RS06720 (J7T77_06605) liaF 1287848..1288546 (-) 699 WP_011226289.1 cell wall-active antibiotics response protein LiaF -
  J7T77_RS06725 - 1288801..1288968 (-) 168 WP_014608530.1 potassium channel family protein -
  J7T77_RS06730 (J7T77_06615) stkP/pknB 1289603..1291474 (-) 1872 WP_014727614.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  J7T77_RS06735 (J7T77_06620) - 1291474..1292211 (-) 738 WP_002946881.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  J7T77_RS06740 (J7T77_06625) rsmB 1292255..1293577 (-) 1323 WP_014608533.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J7T77_RS06745 (J7T77_06630) fmt 1293567..1294502 (-) 936 WP_014608534.1 methionyl-tRNA formyltransferase -
  J7T77_RS06750 (J7T77_06635) - 1294520..1296916 (-) 2397 WP_014608535.1 primosomal protein N' -
  J7T77_RS06755 (J7T77_06640) rpoZ 1297058..1297372 (-) 315 WP_179970629.1 DNA-directed RNA polymerase subunit omega -
  J7T77_RS06760 (J7T77_06645) gmk 1297394..1298023 (-) 630 WP_014608537.1 guanylate kinase -
  J7T77_RS06765 (J7T77_06650) ftsY 1298249..1299640 (-) 1392 WP_014608538.1 signal recognition particle-docking protein FtsY -
  J7T77_RS06770 (J7T77_06655) - 1299654..1300469 (-) 816 WP_011226298.1 Cof-type HAD-IIB family hydrolase -
  J7T77_RS06775 (J7T77_06660) - 1300462..1301256 (-) 795 WP_011681412.1 HAD-IIB family hydrolase -
  J7T77_RS06780 (J7T77_06665) - 1301440..1301817 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  J7T77_RS06785 (J7T77_06670) - 1301822..1302520 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  J7T77_RS06790 (J7T77_06675) - 1302532..1303316 (+) 785 Protein_1283 ABC transporter permease -
  J7T77_RS06795 (J7T77_06680) amiF 1303366..1304295 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  J7T77_RS06800 (J7T77_06685) amiE 1304288..1305373 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7T77_RS06805 (J7T77_06690) amiD 1305383..1306309 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  J7T77_RS06810 (J7T77_06695) amiC 1306309..1307802 (-) 1494 WP_179970628.1 ABC transporter permease Regulator
  J7T77_RS06815 (J7T77_06700) amiA3 1307863..1309836 (-) 1974 WP_372589652.1 peptide ABC transporter substrate-binding protein Regulator
  J7T77_RS06820 (J7T77_06705) - 1310073..1310263 (-) 191 Protein_1289 IS3 family transposase -
  J7T77_RS06825 - 1310257..1310667 (-) 411 Protein_1290 ATP-binding cassette domain-containing protein -
  J7T77_RS06830 (J7T77_06720) - 1310699..1311013 (-) 315 Protein_1291 TatD family hydrolase -
  J7T77_RS06835 (J7T77_06725) - 1311362..1312567 (+) 1206 WP_084831159.1 OFA family MFS transporter -
  J7T77_RS06840 (J7T77_06730) - 1312614..1313965 (-) 1352 Protein_1293 IS3 family transposase -
  J7T77_RS06845 (J7T77_06735) pta 1314054..1315022 (-) 969 WP_372589653.1 phosphate acetyltransferase -
  J7T77_RS06850 (J7T77_06740) - 1315036..1315932 (-) 897 WP_011226316.1 RluA family pseudouridine synthase -
  J7T77_RS06855 (J7T77_06745) - 1315929..1316765 (-) 837 WP_014608552.1 NAD kinase -
  J7T77_RS06860 (J7T77_06750) - 1316737..1317411 (-) 675 WP_372589654.1 GTP pyrophosphokinase family protein -
  J7T77_RS06865 (J7T77_06755) - 1317507..1318082 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  J7T77_RS06870 (J7T77_06760) - 1318447..1319418 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  J7T77_RS06875 (J7T77_06765) - 1319422..1320534 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  J7T77_RS06880 (J7T77_06770) - 1320536..1320883 (+) 348 WP_011226321.1 DUF1831 domain-containing protein -
  J7T77_RS06885 (J7T77_06775) - 1321028..1321687 (+) 660 WP_014608556.1 redox-sensing transcriptional repressor Rex -
  J7T77_RS06890 (J7T77_06780) - 1321680..1322375 (+) 696 WP_014608557.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  J7T77_RS06895 (J7T77_06785) radC 1322428..1323114 (-) 687 WP_011226324.1 DNA repair protein RadC -
  J7T77_RS06900 (J7T77_06790) - 1323163..1324947 (-) 1785 WP_014727631.1 rhamnan synthesis F family protein -
  J7T77_RS06905 (J7T77_06795) - 1324944..1325999 (-) 1056 WP_002948022.1 glycosyltransferase -
  J7T77_RS06910 (J7T77_06800) - 1326019..1327224 (-) 1206 WP_014727633.1 ABC transporter ATP-binding protein -
  J7T77_RS06915 (J7T77_06805) - 1327224..1328033 (-) 810 WP_024703948.1 ABC transporter permease -
  J7T77_RS06920 (J7T77_06810) - 1328017..1328973 (-) 957 WP_100262334.1 glycosyltransferase family 2 protein -
  J7T77_RS06925 (J7T77_06815) cps2T 1328970..1330118 (-) 1149 WP_084829759.1 beta 1-4 rhamnosyltransferase Cps2T -
  J7T77_RS06930 (J7T77_06820) - 1330224..1331765 (-) 1542 WP_084829967.1 DUF2142 domain-containing protein -
  J7T77_RS06935 (J7T77_06825) - 1331772..1332776 (-) 1005 WP_179971421.1 glycosyltransferase family 2 protein -
  J7T77_RS06940 (J7T77_06830) - 1332773..1334050 (-) 1278 WP_084829761.1 lipopolysaccharide biosynthesis protein -
  J7T77_RS06945 (J7T77_06835) - 1334043..1334375 (-) 333 WP_011226332.1 DUF2304 domain-containing protein -
  J7T77_RS06950 (J7T77_06840) - 1334381..1335076 (-) 696 WP_173405413.1 glycosyltransferase family 2 protein -
  J7T77_RS06955 (J7T77_06845) rfbD 1335153..1336004 (-) 852 WP_002951456.1 dTDP-4-dehydrorhamnose reductase -
  J7T77_RS06960 (J7T77_06850) - 1336081..1337415 (-) 1335 WP_084829001.1 DUF6056 family protein -
  J7T77_RS06965 (J7T77_06855) - 1337528..1338445 (-) 918 WP_002946425.1 glycosyltransferase family 2 protein -
  J7T77_RS06970 (J7T77_06860) - 1338508..1339923 (-) 1416 WP_014727640.1 DUF2142 domain-containing protein -
  J7T77_RS06975 (J7T77_06865) - 1340257..1340592 (-) 336 WP_002891474.1 metal-sulfur cluster assembly factor -
  J7T77_RS06980 (J7T77_06870) rpoD 1340646..1341755 (-) 1110 WP_011226338.1 RNA polymerase sigma factor RpoD -
  J7T77_RS06985 (J7T77_06875) dnaG 1341759..1343570 (-) 1812 WP_372589655.1 DNA primase -
  J7T77_RS06990 (J7T77_06880) rpsU 1343941..1344117 (-) 177 WP_011226340.1 30S ribosomal protein S21 -
  J7T77_RS06995 (J7T77_06885) - 1344312..1345106 (-) 795 WP_014621826.1 ABC transporter substrate-binding protein -
  J7T77_RS07000 (J7T77_06890) - 1345199..1346308 (-) 1110 WP_014727642.1 aminotransferase -
  J7T77_RS07005 (J7T77_06895) - 1346655..1347452 (-) 798 WP_002951495.1 transporter substrate-binding domain-containing protein -
  J7T77_RS07010 (J7T77_06900) - 1347449..1348279 (-) 831 WP_022097022.1 transporter substrate-binding domain-containing protein -
  J7T77_RS07015 (J7T77_06905) - 1348492..1348956 (-) 465 WP_011681454.1 8-oxo-dGTP diphosphatase -
  J7T77_RS07020 (J7T77_06910) uvrB 1349001..1350992 (-) 1992 WP_002953358.1 excinuclease ABC subunit UvrB -
  J7T77_RS07025 (J7T77_06915) - 1351679..1352615 (-) 937 Protein_1330 CPBP family intramembrane glutamic endopeptidase -
  J7T77_RS07030 (J7T77_06920) - 1352813..1355023 (+) 2211 WP_179970611.1 ABC transporter substrate-binding protein/permease -
  J7T77_RS07035 (J7T77_06925) - 1355023..1355763 (+) 741 WP_011681459.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72265.33 Da        Isoelectric Point: 5.2648

>NTDB_id=552707 J7T77_RS06815 WP_372589652.1 1307863..1309836(-) (amiA3) [Streptococcus thermophilus strain S24746]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNL
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVNQSSKLNVAKVQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATLNAANAAAEDWDISNSVGWAPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASLQVGDKNSSNDYIKYVKPQEKVVTKKEYEQSREKWLKE
KKESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=552707 J7T77_RS06815 WP_372589652.1 1307863..1309836(-) (amiA3) [Streptococcus thermophilus strain S24746]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATCTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTAACCAAAGCTCTAAACTTAATGTTGCCAAAGTCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGGTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGACTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCCTCCAGGTGGGTGATAAAAACTCATCAAACGACT
ACATCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAA
AAGAAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

99.543

100

0.995
  amiA3 Streptococcus thermophilus LMG 18311

98.326

100

0.983
  amiA Streptococcus salivarius strain HSISS4

90.563

100

0.906