Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   J7T77_RS06810 Genome accession   NZ_CP072430
Coordinates   1306309..1307802 (-) Length   497 a.a.
NCBI ID   WP_179970628.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301309..1312802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T77_RS06780 (J7T77_06665) - 1301440..1301817 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  J7T77_RS06785 (J7T77_06670) - 1301822..1302520 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  J7T77_RS06790 (J7T77_06675) - 1302532..1303316 (+) 785 Protein_1283 ABC transporter permease -
  J7T77_RS06795 (J7T77_06680) amiF 1303366..1304295 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  J7T77_RS06800 (J7T77_06685) amiE 1304288..1305373 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  J7T77_RS06805 (J7T77_06690) amiD 1305383..1306309 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  J7T77_RS06810 (J7T77_06695) amiC 1306309..1307802 (-) 1494 WP_179970628.1 ABC transporter permease Regulator
  J7T77_RS06815 (J7T77_06700) amiA3 1307863..1309836 (-) 1974 WP_372589652.1 peptide ABC transporter substrate-binding protein Regulator
  J7T77_RS06820 (J7T77_06705) - 1310073..1310263 (-) 191 Protein_1289 IS3 family transposase -
  J7T77_RS06825 - 1310257..1310667 (-) 411 Protein_1290 ATP-binding cassette domain-containing protein -
  J7T77_RS06830 (J7T77_06720) - 1310699..1311013 (-) 315 Protein_1291 TatD family hydrolase -
  J7T77_RS06835 (J7T77_06725) - 1311362..1312567 (+) 1206 WP_084831159.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55818.68 Da        Isoelectric Point: 10.0158

>NTDB_id=552706 J7T77_RS06810 WP_179970628.1 1306309..1307802(-) (amiC) [Streptococcus thermophilus strain S24746]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=552706 J7T77_RS06810 WP_179970628.1 1306309..1307802(-) (amiC) [Streptococcus thermophilus strain S24746]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974
  amiC Streptococcus salivarius strain HSISS4

96.378

100

0.964