NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	LVO07_RS06505	Genome accession	NZ_CP089930
Coordinates	1367380..1368504 (-)	Length	374 a.a.
NCBI ID	WP_000228513.1	Uniprot ID	A0ABU1DUH0
Organism	Escherichia coli strain E69
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1362380..1373504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVO07_RS06475 (LVO07_06475)	yrdA	1364180..1364734 (+)	555	WP_233074260.1	gamma carbonic anhydrase family protein	-
LVO07_RS06480 (LVO07_06480)	yrdB	1364710..1364967 (-)	258	WP_001070563.1	DUF1488 domain-containing protein	-
LVO07_RS06485 (LVO07_06485)	aroE	1364964..1365782 (-)	819	WP_000409178.1	shikimate dehydrogenase	-
LVO07_RS06490 (LVO07_06490)	tsaC	1365787..1366359 (-)	573	WP_010346162.1	L-threonylcarbamoyladenylate synthase type 1 TsaC	-
LVO07_RS06495 (LVO07_06495)	yrdD	1366364..1366906 (-)	543	WP_010346159.1	type I DNA topoisomerase	-
LVO07_RS06500 (LVO07_06500)	smg	1366935..1367408 (-)	474	WP_000460672.1	DUF494 family protein Smg	-
LVO07_RS06505 (LVO07_06505)	dprA	1367380..1368504 (-)	1125	WP_000228513.1	DNA-protecting protein DprA	Machinery gene
LVO07_RS06510 (LVO07_06510)	def	1368634..1369143 (+)	510	WP_000114984.1	peptide deformylase	-
LVO07_RS06515 (LVO07_06515)	fmt	1369158..1370105 (+)	948	WP_225761961.1	methionyl-tRNA formyltransferase	-
LVO07_RS06520 (LVO07_06520)	rsmB	1370157..1371446 (+)	1290	WP_085461313.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
LVO07_RS06525 (LVO07_06525)	trkA	1371468..1372844 (+)	1377	WP_000691382.1	Trk system potassium transporter TrkA	-
LVO07_RS06530 (LVO07_06530)	mscL	1372974..1373384 (+)	411	WP_000022446.1	large-conductance mechanosensitive channel protein MscL	-

Sequence

Protein

Download Length: 374 a.a. Molecular weight: 40721.64 Da Isoelectric Point: 5.9919

                                >NTDB_id=552567 LVO07_RS06505 WP_000228513.1 1367380..1368504(-) (dprA) [Escherichia coli strain E69]

MVDTEIWLRLMGISSLYGDDMVRIAHWLAKQSYIDAVVLQQTGLTLRQAQRFLSFPQKSIESSLCWLEQPNHHLIPADSE

FYPPQLLATVDYPGALFVAGGLPALRSFQLAVVGSRAHSWYGERWGRLFCESLATRGVTITSGLARGIDGVAHKAAVQVN

GVSIAVLGNGLNTIHPRRHAQLAASLLEQGGAIVSEFPLDVPPLSYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA

LEQGREVFALPGPLGSPGSEGPHWLIKQGATLVTEPEEILENLQYGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE

VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide

Download Length: 1125 bp

                                >NTDB_id=552567 LVO07_RS06505 WP_000228513.1 1367380..1368504(-) (dprA) [Escherichia coli strain E69]

ATGGTCGATACAGAAATTTGGCTGCGTCTGATGGGCATCAGCAGCTTGTACGGCGATGATATGGTTCGTATCGCTCACTG

GCTGGCAAAACAGTCGTATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT

CATTTCCGCAAAAGAGTATTGAAAGCTCACTTTGTTGGCTTGAACAACCCAATCATCATTTAATCCCTGCGGATAGCGAA

TTTTATCCTCCTCAACTTCTCGCAACGGTTGATTATCCCGGTGCTCTGTTTGTTGCCGGGGGGCTTCCCGCATTGCGATC

ATTTCAGCTTGCCGTCGTGGGAAGTCGTGCTCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAATCGCTGG

CGACACGTGGCGTAACGATTACCAGTGGGCTGGCGCGTGGAATCGACGGTGTGGCACATAAAGCGGCGGTACAGGTAAAT

GGCGTTAGTATTGCGGTCTTGGGAAATGGACTCAATACCATCCATCCGCGTCGCCATGCTCAACTCGCCGCTAGTCTGCT

TGAACAGGGAGGCGCTATCGTTTCCGAATTTCCGCTGGATGTTCCGCCACTGTCTTACAATTTCCCGCGAAGAAATCGCA

TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTAGAAGCTGCTTTACGTAGTGGTTCTTTGGTGACAGCACGTTGTGCG

CTTGAACAGGGGCGAGAAGTTTTTGCCCTGCCCGGTCCATTAGGGAGTCCGGGAAGCGAAGGACCTCACTGGTTAATAAA

ACAAGGTGCGACTCTTGTGACGGAACCGGAAGAAATCCTGGAAAATTTGCAATACGGATTGCACTGGTTGCCAGATGCCC

CTGAAAATTCATTTTATTCACCGGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG

GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTAGAACTGGAGTT

AGCAGGGTGGATCGCAGCAGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG

TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	47.696	98.663	0.471
dprA	Glaesserella parasuis strain SC1401	43.917	90.107	0.396
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	47.097	82.888	0.39
dprA	Vibrio cholerae strain A1552	47.097	82.888	0.39
dprA	Haemophilus influenzae Rd KW20	43.027	90.107	0.388
dprA	Legionella pneumophila strain ERS1305867	42.553	87.968	0.374

Detailed information NTG0552567