Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J5X90_RS17760 Genome accession   NZ_CP072425
Coordinates   4029554..4029847 (-) Length   97 a.a.
NCBI ID   WP_125779051.1    Uniprot ID   -
Organism   Pseudoalteromonas viridis strain BBR56     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4024554..4034847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X90_RS17735 (J5X90_17735) dsbB 4024936..4025448 (+) 513 WP_209052247.1 disulfide bond formation protein DsbB -
  J5X90_RS17740 (J5X90_17740) - 4025456..4025758 (+) 303 WP_209052248.1 hypothetical protein -
  J5X90_RS17745 (J5X90_17745) - 4025797..4025955 (-) 159 WP_209052249.1 hypothetical protein -
  J5X90_RS17750 (J5X90_17750) - 4026237..4028588 (+) 2352 WP_209052250.1 TonB-dependent receptor -
  J5X90_RS17755 (J5X90_17755) - 4028601..4029491 (+) 891 WP_209052251.1 hypothetical protein -
  J5X90_RS17760 (J5X90_17760) comEA 4029554..4029847 (-) 294 WP_125779051.1 ComEA family DNA-binding protein Machinery gene
  J5X90_RS17765 (J5X90_17765) - 4030232..4030543 (+) 312 WP_125779052.1 YebG family protein -
  J5X90_RS17770 (J5X90_17770) - 4030608..4031801 (-) 1194 WP_209052252.1 amino acid aminotransferase -
  J5X90_RS17775 (J5X90_17775) - 4031906..4032565 (-) 660 WP_209052253.1 GAF domain-containing protein -
  J5X90_RS17780 (J5X90_17780) - 4032678..4034324 (-) 1647 WP_125779055.1 fused response regulator/phosphatase -
  J5X90_RS17785 (J5X90_17785) - 4034343..4034648 (-) 306 WP_046006651.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10429.29 Da        Isoelectric Point: 9.8652

>NTDB_id=552488 J5X90_RS17760 WP_125779051.1 4029554..4029847(-) (comEA) [Pseudoalteromonas viridis strain BBR56]
MNIKTLLATLALSAALPVIAQPEQMPATVQQVADAVINVNQASAEELTRLPGIGMKKAQAIVRYREEAGEFQDMDALLRV
KGIGVNILAKLKGRVTF

Nucleotide


Download         Length: 294 bp        

>NTDB_id=552488 J5X90_RS17760 WP_125779051.1 4029554..4029847(-) (comEA) [Pseudoalteromonas viridis strain BBR56]
ATGAATATCAAAACACTGTTAGCAACATTGGCGCTGTCCGCCGCACTTCCGGTTATTGCTCAGCCAGAACAAATGCCTGC
AACCGTGCAGCAAGTCGCCGATGCGGTCATTAATGTCAATCAAGCCAGTGCCGAAGAGCTAACCCGTTTACCTGGCATCG
GCATGAAAAAAGCGCAGGCCATTGTTCGCTATCGCGAGGAAGCGGGCGAATTTCAGGATATGGATGCCCTATTGCGCGTG
AAGGGGATAGGCGTCAACATTCTTGCCAAACTCAAAGGCAGAGTTACTTTTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

51.648

93.814

0.485
  comEA Vibrio cholerae strain A1552

51.648

93.814

0.485
  comE1/comEA Haemophilus influenzae Rd KW20

40.179

100

0.464
  comEA/comE1 Glaesserella parasuis strain SC1401

44.444

83.505

0.371
  comEA Vibrio campbellii strain DS40M4

38.462

93.814

0.361