Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | J5A60_RS07285 | Genome accession | NZ_CP072381 |
| Coordinates | 1519188..1519517 (+) | Length | 109 a.a. |
| NCBI ID | WP_212509932.1 | Uniprot ID | - |
| Organism | Aggregatibacter sp. oral taxon 513 strain W11186 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1514188..1524517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5A60_RS07265 (J5A60_07265) | - | 1516421..1517176 (-) | 756 | WP_109431940.1 | DeoR/GlpR family transcriptional regulator | - |
| J5A60_RS07270 (J5A60_07270) | - | 1517241..1518116 (-) | 876 | WP_212509930.1 | rhomboid family intramembrane serine protease | - |
| J5A60_RS07275 (J5A60_07275) | - | 1518158..1518472 (+) | 315 | WP_109128229.1 | DUF5389 domain-containing protein | - |
| J5A60_RS07280 (J5A60_07280) | glpE | 1518469..1518795 (-) | 327 | WP_212509931.1 | thiosulfate sulfurtransferase GlpE | - |
| J5A60_RS07285 (J5A60_07285) | comE1/comEA | 1519188..1519517 (+) | 330 | WP_212509932.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| J5A60_RS07290 (J5A60_07290) | rdgB | 1519640..1520239 (+) | 600 | WP_212509933.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| J5A60_RS07295 (J5A60_07295) | - | 1520282..1520605 (+) | 324 | WP_212509934.1 | YbjQ family protein | - |
| J5A60_RS07300 (J5A60_07300) | hemW | 1520605..1521774 (+) | 1170 | WP_212509935.1 | radical SAM family heme chaperone HemW | - |
| J5A60_RS07305 (J5A60_07305) | rpiA | 1521870..1522526 (+) | 657 | WP_212509936.1 | ribose-5-phosphate isomerase RpiA | - |
| J5A60_RS07310 (J5A60_07310) | serA | 1522545..1523777 (+) | 1233 | WP_212509937.1 | phosphoglycerate dehydrogenase | - |
| J5A60_RS07315 (J5A60_07315) | - | 1523849..1524490 (-) | 642 | WP_212509938.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11525.35 Da Isoelectric Point: 10.0532
>NTDB_id=552251 J5A60_RS07285 WP_212509932.1 1519188..1519517(+) (comE1/comEA) [Aggregatibacter sp. oral taxon 513 strain W11186]
MKVMKHLLASLFVLGTVFTGTAMATEKAAEPAAQTEQTAATTTVSQKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAIEQLLEVQGIGKATLEKNRDRIAL
MKVMKHLLASLFVLGTVFTGTAMATEKAAEPAAQTEQTAATTTVSQKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GAFSAIEQLLEVQGIGKATLEKNRDRIAL
Nucleotide
Download Length: 330 bp
>NTDB_id=552251 J5A60_RS07285 WP_212509932.1 1519188..1519517(+) (comE1/comEA) [Aggregatibacter sp. oral taxon 513 strain W11186]
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACGGTGTTTACCGGCACTGCCATGGCAACAGAAAA
GGCGGCAGAACCTGCAGCACAAACAGAGCAAACTGCCGCAACGACCACCGTTAGCCAGAAAGTCAACATCAACACCGCCT
CCGCCGCTGAAATTCAAAAAGCGCTTGTGGGTATCGGGGCGAAAAAAGCGGAAGCCGTTGTGCAATACCGTGAAAAACAC
GGCGCGTTTAGTGCTATCGAGCAATTATTAGAAGTGCAAGGCATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGCACTGTAA
ATGAAAGTAATGAAACATCTTTTGGCTTCTCTGTTCGTGTTAGGAACGGTGTTTACCGGCACTGCCATGGCAACAGAAAA
GGCGGCAGAACCTGCAGCACAAACAGAGCAAACTGCCGCAACGACCACCGTTAGCCAGAAAGTCAACATCAACACCGCCT
CCGCCGCTGAAATTCAAAAAGCGCTTGTGGGTATCGGGGCGAAAAAAGCGGAAGCCGTTGTGCAATACCGTGAAAAACAC
GGCGCGTTTAGTGCTATCGAGCAATTATTAGAAGTGCAAGGCATCGGCAAAGCTACGCTCGAAAAAAATCGCGATCGCAT
CGCACTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60 |
100 |
0.606 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.097 |
100 |
0.55 |
| comEA | Vibrio cholerae C6706 |
43.396 |
97.248 |
0.422 |
| comEA | Vibrio cholerae strain A1552 |
43.396 |
97.248 |
0.422 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
43.396 |
97.248 |
0.422 |