Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   J4854_RS03760 Genome accession   NZ_CP072329
Coordinates   724142..725092 (+) Length   316 a.a.
NCBI ID   WP_200772290.1    Uniprot ID   A0A9X1BAT9
Organism   Streptococcus lactarius strain CCUG 66490     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 719142..730092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS03740 (J4854_03740) - 719701..720408 (+) 708 WP_200772287.1 glucosamine-6-phosphate deaminase -
  J4854_RS03745 (J4854_03745) - 720569..721915 (+) 1347 WP_200772288.1 DUF1958 domain-containing protein -
  J4854_RS03750 (J4854_03750) - 721987..723159 (+) 1173 WP_200772289.1 MFS transporter -
  J4854_RS03755 (J4854_03755) - 723517..723906 (+) 390 WP_234700073.1 hypothetical protein -
  J4854_RS03760 (J4854_03760) coiA 724142..725092 (+) 951 WP_200772290.1 competence protein CoiA Machinery gene
  J4854_RS03765 (J4854_03765) pepF 725163..726965 (+) 1803 WP_200772291.1 oligoendopeptidase F Regulator
  J4854_RS03770 (J4854_03770) - 726967..727686 (+) 720 WP_200772292.1 O-methyltransferase -
  J4854_RS03775 (J4854_03775) prsA 727757..728704 (+) 948 WP_200772293.1 peptidylprolyl isomerase PrsA -
  J4854_RS03780 (J4854_03780) - 728957..729442 (+) 486 WP_200772294.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 38061.95 Da        Isoelectric Point: 7.7354

>NTDB_id=552046 J4854_RS03760 WP_200772290.1 724142..725092(+) (coiA) [Streptococcus lactarius strain CCUG 66490]
MFIAMDKHQERWNCMEEIPPVAAGPFYCLACQSEVRLKNGSVLRAHFAHVELQQCPYHHEAESMEHLELKASLYDWGSKE
ARTEVEYYLPEFQQIADLLVVDKKLALEVQCSPLSLERLKERSDAYRAHGYQVYWLLGKKLWLKERLSNLQAGFLYFSQN
RGFHLWELDLAKKEVRLQYLIHEDLRGRLHYKTEVFPFGKGPLLEMLRTPYLKQPLQQLPVDLDQHFLSYVRQQLFYRQP
RWMKLQEQLYLQGHHLLEKDLDYFYPMCRPIVSDHLIQIEGDLKDYYQQFLTYYKEKGIKPVQTLYSPCFYRWQKR

Nucleotide


Download         Length: 951 bp        

>NTDB_id=552046 J4854_RS03760 WP_200772290.1 724142..725092(+) (coiA) [Streptococcus lactarius strain CCUG 66490]
ATGTTTATAGCGATGGATAAACATCAAGAGCGGTGGAATTGTATGGAGGAGATTCCACCTGTGGCAGCAGGGCCCTTTTA
TTGCTTAGCTTGTCAGAGTGAAGTGCGGTTGAAAAACGGCTCAGTGTTACGGGCTCATTTTGCCCATGTAGAATTACAAC
AGTGTCCCTACCATCATGAAGCTGAGAGCATGGAACACCTGGAATTAAAAGCCAGTCTTTATGACTGGGGATCCAAGGAA
GCAAGAACAGAAGTCGAATATTATTTGCCAGAGTTTCAGCAAATTGCGGATCTTTTGGTTGTGGACAAGAAGTTAGCTTT
GGAGGTGCAGTGTAGTCCCTTATCTTTGGAACGATTAAAAGAGAGAAGCGATGCATATCGAGCCCATGGCTATCAGGTTT
ATTGGTTGCTGGGAAAAAAGCTGTGGCTCAAGGAAAGACTGAGCAACTTACAAGCTGGCTTTCTTTATTTTAGTCAAAAT
CGTGGATTTCATCTTTGGGAATTGGATCTTGCAAAGAAAGAAGTGCGGTTGCAGTACCTCATTCATGAGGATTTACGGGG
ACGACTGCATTATAAAACAGAAGTATTTCCTTTTGGGAAAGGGCCCTTGCTTGAAATGCTACGGACACCATATCTAAAGC
AGCCCTTGCAACAACTGCCAGTAGACCTGGATCAGCATTTTTTATCTTACGTAAGGCAGCAACTATTCTACCGTCAGCCA
AGGTGGATGAAGTTACAGGAGCAACTCTATTTGCAGGGACACCATTTACTTGAGAAAGATCTAGACTATTTTTATCCTAT
GTGTCGTCCCATTGTTTCAGACCATTTGATTCAGATTGAGGGTGATCTCAAAGATTATTACCAGCAATTTCTCACTTATT
ACAAGGAGAAAGGAATCAAGCCGGTTCAAACTCTTTATTCTCCCTGCTTTTATAGGTGGCAGAAAAGATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(26-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.923

98.734

0.513
  coiA Streptococcus pneumoniae Rx1

49.679

98.734

0.491
  coiA Streptococcus pneumoniae D39

49.679

98.734

0.491
  coiA Streptococcus pneumoniae R6

49.679

98.734

0.491
  coiA Streptococcus pneumoniae TIGR4

49.359

98.734

0.487
  coiA Lactococcus lactis subsp. cremoris KW2

43.302

100

0.44