Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J4854_RS03765 Genome accession   NZ_CP072329
Coordinates   725163..726965 (+) Length   600 a.a.
NCBI ID   WP_200772291.1    Uniprot ID   A0A9X1BBX7
Organism   Streptococcus lactarius strain CCUG 66490     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 720163..731965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS03745 (J4854_03745) - 720569..721915 (+) 1347 WP_200772288.1 DUF1958 domain-containing protein -
  J4854_RS03750 (J4854_03750) - 721987..723159 (+) 1173 WP_200772289.1 MFS transporter -
  J4854_RS03755 (J4854_03755) - 723517..723906 (+) 390 WP_234700073.1 hypothetical protein -
  J4854_RS03760 (J4854_03760) coiA 724142..725092 (+) 951 WP_200772290.1 competence protein CoiA Machinery gene
  J4854_RS03765 (J4854_03765) pepF 725163..726965 (+) 1803 WP_200772291.1 oligoendopeptidase F Regulator
  J4854_RS03770 (J4854_03770) - 726967..727686 (+) 720 WP_200772292.1 O-methyltransferase -
  J4854_RS03775 (J4854_03775) prsA 727757..728704 (+) 948 WP_200772293.1 peptidylprolyl isomerase PrsA -
  J4854_RS03780 (J4854_03780) - 728957..729442 (+) 486 WP_200772294.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69378.27 Da        Isoelectric Point: 4.6547

>NTDB_id=552047 J4854_RS03765 WP_200772291.1 725163..726965(+) (pepF) [Streptococcus lactarius strain CCUG 66490]
MVKQRNEIDEKYQWDLSTIFATDQAWEDEASSLAADMKAASHYAGHLLDSAQNLLETTEAYLELSRRLEKVYVYAHMKND
QDTRVAKYQEYQSKGMALYSLLGETFAFYEPEFMAITDEQYKDFVNEVPALEQYGHYFDCLLEKKEHVLSHKEEELLAGA
GEIFASGGETFEILDNADIVFPTVHDDKGEEVQLTHGNYISLVESKDRAVRKEAYEGLYKVYKQYQHTYAKTLQTNVKVH
NFNAKVRKFSSAREAALSENFVPESVYERLVAAVNKHLPLLQRYIQLRSKILGISDLKMYDMYTPLSDTDYKFSYEESLA
KAEEVLAVLGEDYLSRVKRAFSERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTREN
QPYVYGDYSIFLAEIASTTNENILTERLLEEVEDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGTVLTSEF
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDRDKYINYLKAGNSDYPL
NVIRKAGVDMEKEDYLDAAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=552047 J4854_RS03765 WP_200772291.1 725163..726965(+) (pepF) [Streptococcus lactarius strain CCUG 66490]
ATGGTAAAACAACGTAATGAAATTGATGAAAAATACCAGTGGGATTTGTCGACGATTTTTGCGACAGATCAAGCTTGGGA
AGATGAAGCAAGTAGCTTAGCTGCGGATATGAAAGCAGCCAGCCACTATGCTGGTCATTTATTGGATTCGGCACAAAATC
TGTTAGAGACCACTGAAGCTTATTTGGAATTGAGCCGCCGGTTGGAGAAGGTCTATGTCTATGCCCATATGAAAAATGAC
CAAGATACACGGGTTGCAAAATACCAAGAATACCAATCAAAAGGGATGGCACTCTATAGTTTATTAGGGGAAACCTTTGC
CTTCTATGAGCCTGAATTCATGGCCATTACGGATGAGCAGTACAAGGATTTTGTAAATGAAGTTCCAGCCTTGGAACAAT
ATGGTCATTATTTTGATTGCTTACTTGAGAAAAAAGAACATGTCTTGTCTCACAAAGAAGAAGAGTTACTTGCTGGAGCG
GGAGAAATCTTTGCATCTGGTGGTGAAACCTTTGAAATCCTAGACAATGCGGATATTGTTTTCCCAACTGTGCATGATGA
CAAGGGTGAAGAAGTGCAATTAACACATGGAAACTATATTTCTTTGGTTGAATCAAAAGATCGTGCGGTCCGTAAAGAAG
CCTATGAAGGACTCTATAAGGTCTATAAACAATATCAACACACGTATGCCAAGACCTTACAAACCAATGTAAAAGTTCAT
AACTTCAATGCCAAAGTGCGCAAATTCTCTTCTGCTCGTGAAGCAGCCCTTTCTGAAAACTTTGTGCCAGAAAGCGTTTA
TGAACGCTTGGTAGCCGCAGTCAACAAACACTTGCCACTCTTGCAACGTTATATTCAGTTGCGTTCTAAAATTCTTGGAA
TCTCTGACTTGAAGATGTATGATATGTATACCCCATTATCAGATACAGACTACAAGTTTAGCTATGAAGAATCCTTGGCA
AAAGCGGAAGAAGTCTTGGCTGTTTTGGGTGAGGATTATCTGTCTCGTGTGAAACGGGCCTTTAGTGAACGATGGATTGA
TGTACATGTTAACCAAGGGAAACGCTCAGGTGCCTATTCAGGTGGTTCTTATGATACCAATGCCTTCATGTTGTTAAACT
GGCAAGATACTCTGGATAATCTCTTTACCTTGGTGCACGAAACTGGTCACAGTATGCATTCGAGCTATACCCGTGAAAAT
CAACCCTACGTCTATGGGGACTACTCTATTTTCCTTGCTGAAATTGCCTCTACGACCAATGAAAATATCTTGACAGAACG
TCTCTTGGAAGAAGTAGAAGATGATCAAACCCGTTTTGCCATCCTCAACCATTTCTTAGATGGCTTCCGTGGAACCGTCT
TCCGTCAAACTCAGTTTGCTGAATTTGAGCATGCGATTCATAAGGCTGACCAAGAAGGAACGGTTTTGACGAGTGAGTTC
TTGAACAACCTTTATGCAGATCTCAATGAGAAATACTATGGTCTTTCAAAAGAAGACAACCCTGAGATCCAATATGAATG
GGCTCGCATTCCTCATTTCTACTATAACTACTACGTTTTCCAATATTCAACTGGTTTTGCGGCAGCTTCAGCTTTAGCTG
AAAAAATCGTTCATGGAACCCAAGAAGACCGTGATAAATATATCAATTACCTGAAAGCTGGGAACTCTGATTATCCACTT
AATGTCATCCGTAAAGCAGGTGTGGATATGGAAAAAGAAGACTATTTGGACGCAGCTTTTGCGGTCTTTGAACGTCGCCT
AAATGAATTTGAAGCCCTCGTAGAAAAATTAGGACTTGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.96

99.333

0.685