Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J6598_RS19960 Genome accession   NZ_CP072325
Coordinates   4313348..4314862 (+) Length   504 a.a.
NCBI ID   WP_227341746.1    Uniprot ID   -
Organism   Aeromonas veronii strain 183026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4308348..4319862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6598_RS19945 (J6598_19970) - 4310085..4311029 (-) 945 WP_245097200.1 branched-chain amino acid transaminase -
  J6598_RS19950 (J6598_19975) ilvM 4311042..4311320 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  J6598_RS19955 (J6598_19980) ilvG 4311317..4312963 (-) 1647 WP_245097198.1 acetolactate synthase 2 catalytic subunit -
  J6598_RS19960 (J6598_19985) comM 4313348..4314862 (+) 1515 WP_227341746.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J6598_RS19965 (J6598_19990) - 4314989..4315888 (+) 900 WP_245097196.1 acyltransferase -
  J6598_RS19970 (J6598_19995) - 4315895..4316860 (+) 966 WP_245097194.1 acyltransferase -
  J6598_RS19975 (J6598_20000) - 4316785..4317291 (-) 507 WP_245097192.1 DUF523 domain-containing protein -
  J6598_RS19980 (J6598_20005) - 4317288..4317938 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  J6598_RS19985 (J6598_20010) - 4318013..4318648 (+) 636 WP_245097189.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54606.54 Da        Isoelectric Point: 7.6884

>NTDB_id=551979 J6598_RS19960 WP_227341746.1 4313348..4314862(+) (comM) [Aeromonas veronii strain 183026]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPNVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLVARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=551979 J6598_RS19960 WP_227341746.1 4313348..4314862(+) (comM) [Aeromonas veronii strain 183026]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCTGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGACCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCTCCCGCCGATCTACCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCAAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACTCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCGTCCCTCATTCAGGATGCCGAAGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACAGCTTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCAATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTAGCGCTGGTGGGCGGCGGCAGCCACCCAAGGCCCGGCGAAATATCGTTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCACTGGAGACG
GGGCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACTACTACCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGTGGCACGGGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCCTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464