Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | LUA14_RS14535 | Genome accession | NZ_CP089530 |
| Coordinates | 2885648..2886652 (-) | Length | 334 a.a. |
| NCBI ID | WP_007408185.1 | Uniprot ID | A7Z768 |
| Organism | Bacillus amyloliquefaciens strain LS1-002-014s | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2880648..2891652
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUA14_RS14505 (LUA14_14505) | - | 2881676..2882332 (-) | 657 | WP_003152699.1 | DUF421 domain-containing protein | - |
| LUA14_RS14510 (LUA14_14510) | - | 2882499..2882885 (+) | 387 | WP_003152697.1 | TIGR04086 family membrane protein | - |
| LUA14_RS14515 (LUA14_14515) | yajC | 2882937..2883197 (-) | 261 | WP_012118091.1 | preprotein translocase subunit YajC | - |
| LUA14_RS14520 (LUA14_14520) | tgt | 2883228..2884373 (-) | 1146 | WP_025285051.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| LUA14_RS14525 (LUA14_14525) | queA | 2884401..2885429 (-) | 1029 | WP_012118092.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| LUA14_RS14530 (LUA14_14530) | - | 2885455..2885655 (-) | 201 | WP_003152687.1 | DUF2905 domain-containing protein | - |
| LUA14_RS14535 (LUA14_14535) | ruvB | 2885648..2886652 (-) | 1005 | WP_007408185.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| LUA14_RS14540 (LUA14_14540) | ruvA | 2886663..2887268 (-) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| LUA14_RS14545 (LUA14_14545) | - | 2887403..2887912 (-) | 510 | WP_025285052.1 | intercompartmental signaling factor BofC | - |
| LUA14_RS21590 | - | 2888045..2888164 (-) | 120 | WP_007612850.1 | hypothetical protein | - |
| LUA14_RS14550 (LUA14_14550) | - | 2888298..2888891 (-) | 594 | WP_169510417.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| LUA14_RS14555 (LUA14_14555) | safA | 2889039..2890229 (-) | 1191 | WP_218791305.1 | SafA/ExsA family spore coat assembly protein | - |
| LUA14_RS14560 (LUA14_14560) | nadA | 2890356..2891459 (-) | 1104 | WP_069006951.1 | quinolinate synthase NadA | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37224.57 Da Isoelectric Point: 4.9033
>NTDB_id=551896 LUA14_RS14535 WP_007408185.1 2885648..2886652(-) (ruvB) [Bacillus amyloliquefaciens strain LS1-002-014s]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQKKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTADVFEVDIEKAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPARD
Nucleotide
Download Length: 1005 bp
>NTDB_id=551896 LUA14_RS14535 WP_007408185.1 2885648..2886652(-) (ruvB) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACATCAGGTCCCGCCATCGAAAGACCGGGGGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCAACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGAGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAAAAGCCCCGGCTCTGGAAATCGCCAGACGGT
CAAGAGGAACGCCGCGGGTTGCAAACCGTCTGCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGTCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTTCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAATCTCGC
CCAGTATATCGGCCAAAAGAAGGTGAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTGG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGGAAAACAACGCTTGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACATCAGGTCCCGCCATCGAAAGACCGGGGGATTTGGCAGCCATTTTGACGGCGCTCGAACCAGGGGATGT
GCTGTTTATAGACGAAATTCACAGGCTGAACCGCTCAATTGAGGAAGTGCTGTACCCGGCGATGGAGGATTTCTGCCTTG
ATATCGTCATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGTCTCGACCTTCCCCCTTTTACGCTTGTAGGAGCAACGACA
AGGGTCGGATTATTGACCGCACCGCTCAGAGACCGGTTCGGAGTGCTGTCGCGCCTTGAATACTATACGCAGGAAGAGCT
GACAGATATCGTGTCAAGAACGGCTGACGTTTTTGAAGTGGATATCGAAAAAGCCCCGGCTCTGGAAATCGCCAGACGGT
CAAGAGGAACGCCGCGGGTTGCAAACCGTCTGCTCAGAAGGGTGAGAGATTTTGCCCAGGTGCTCGGCGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGATGCGCTCGGCCTTGACCATATCGACCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAGCGGCGGTCCCGTCGGTCTTGATACGATTTCCGCGACAATCGGCGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTGCAGATCGGATTTCTTCAGAGGACGCCGAGGGGACGGGTCGTGACTCCG
GCTGTGTATGAACATTTTCGATTGGAGGCGCCCGCCCGTGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
92.216 |
100 |
0.922 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae R6 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae D39 |
60.736 |
97.605 |
0.593 |
| ruvB | Synechocystis sp. PCC 6803 |
58.359 |
98.503 |
0.575 |
| ruvB | Helicobacter pylori 26695 |
52.744 |
98.204 |
0.518 |