Detailed information NTG0551897

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: LUA14_RS14540
• Genome accession: NZ_CP089530
• Coordinates: 2886663..2887268 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain LS1-002-014s
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2881663..2892268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUA14_RS14505 (LUA14_14505)	-	2881676..2882332 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
LUA14_RS14510 (LUA14_14510)	-	2882499..2882885 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
LUA14_RS14515 (LUA14_14515)	yajC	2882937..2883197 (-)	261	WP_012118091.1	preprotein translocase subunit YajC	-
LUA14_RS14520 (LUA14_14520)	tgt	2883228..2884373 (-)	1146	WP_025285051.1	tRNA guanosine(34) transglycosylase Tgt	-
LUA14_RS14525 (LUA14_14525)	queA	2884401..2885429 (-)	1029	WP_012118092.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LUA14_RS14530 (LUA14_14530)	-	2885455..2885655 (-)	201	WP_003152687.1	DUF2905 domain-containing protein	-
LUA14_RS14535 (LUA14_14535)	ruvB	2885648..2886652 (-)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LUA14_RS14540 (LUA14_14540)	ruvA	2886663..2887268 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
LUA14_RS14545 (LUA14_14545)	-	2887403..2887912 (-)	510	WP_025285052.1	intercompartmental signaling factor BofC	-
LUA14_RS21590	-	2888045..2888164 (-)	120	WP_007612850.1	hypothetical protein	-
LUA14_RS14550 (LUA14_14550)	-	2888298..2888891 (-)	594	WP_169510417.1	YhcN/YlaJ family sporulation lipoprotein	-
LUA14_RS14555 (LUA14_14555)	safA	2889039..2890229 (-)	1191	WP_218791305.1	SafA/ExsA family spore coat assembly protein	-
LUA14_RS14560 (LUA14_14560)	nadA	2890356..2891459 (-)	1104	WP_069006951.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=551897 LUA14_RS14540 WP_003152683.1 2886663..2887268(-) (ruvA) [Bacillus amyloliquefaciens strain LS1-002-014s]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=551897 LUA14_RS14540 WP_003152683.1 2886663..2887268(-) (ruvA) [Bacillus amyloliquefaciens strain LS1-002-014s]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTACGGTTTTTCAACCCGAGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCT
AAAGGGGCCCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408