Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J6I88_RS17220 Genome accession   NZ_CP072305
Coordinates   3591119..3592606 (+) Length   495 a.a.
NCBI ID   WP_104159681.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3586119..3597606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS17195 (J6I88_17195) ribD 3587035..3588120 (-) 1086 WP_001292517.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  J6I88_RS17200 (J6I88_17200) nrdR 3588136..3588594 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  J6I88_RS17205 (J6I88_17205) - 3588753..3590150 (-) 1398 WP_049594866.1 ammonium transporter -
  J6I88_RS17210 (J6I88_17210) glnK 3590208..3590546 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  J6I88_RS17215 (J6I88_17215) - 3590826..3591053 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  J6I88_RS17220 (J6I88_17220) comM 3591119..3592606 (+) 1488 WP_104159681.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J6I88_RS17225 (J6I88_17225) - 3592621..3594055 (-) 1435 Protein_3380 PLP-dependent aminotransferase family protein -
  J6I88_RS17230 (J6I88_17230) - 3594167..3594943 (+) 777 WP_000845024.1 aldolase -
  J6I88_RS17235 (J6I88_17235) - 3594959..3595837 (+) 879 WP_109426817.1 dihydrodipicolinate synthase family protein -
  J6I88_RS17240 (J6I88_17240) - 3595880..3596701 (-) 822 WP_000975215.1 TorF family putative porin -
  J6I88_RS18840 - 3596758..3596928 (-) 171 WP_000492279.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54434.32 Da        Isoelectric Point: 7.2940

>NTDB_id=551770 J6I88_RS17220 WP_104159681.1 3591119..3592606(+) (comM) [Acinetobacter baumannii strain KSK Sensitive]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHHVLRVARTIADLAQSEIIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=551770 J6I88_RS17220 WP_104159681.1 3591119..3592606(+) (comM) [Acinetobacter baumannii strain KSK Sensitive]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGATTACCCTCTCTAACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGAC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCACGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGATCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.491
  comM Legionella pneumophila str. Paris

48.795

100

0.491
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.467