Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DEIPE_RS02175 Genome accession   NC_019793
Coordinates   474605..475582 (+) Length   325 a.a.
NCBI ID   WP_015234347.1    Uniprot ID   K9ZYN6
Organism   Deinococcus peraridilitoris DSM 19664     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469605..480582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPE_RS02155 (Deipe_0436) - 471060..471281 (+) 222 WP_015234343.1 hypothetical protein -
  DEIPE_RS02160 (Deipe_0437) - 471393..473306 (+) 1914 WP_015234344.1 serine/threonine-protein kinase -
  DEIPE_RS02165 (Deipe_0438) - 473427..473693 (+) 267 WP_015234345.1 twin-arginine translocase TatA/TatE family subunit -
  DEIPE_RS02170 (Deipe_0439) - 473887..474468 (+) 582 WP_245557580.1 DedA family protein -
  DEIPE_RS02175 (Deipe_0440) comM 474605..475582 (+) 978 WP_015234347.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DEIPE_RS02180 (Deipe_0441) - 475611..475808 (+) 198 WP_015234348.1 hypothetical protein -
  DEIPE_RS02185 (Deipe_0442) - 475830..476051 (-) 222 WP_157448734.1 helix-turn-helix transcriptional regulator -
  DEIPE_RS02190 (Deipe_0443) - 476150..476464 (+) 315 WP_015234350.1 hypothetical protein -
  DEIPE_RS02195 (Deipe_0444) dcm 476490..477263 (+) 774 WP_015234351.1 DNA (cytosine-5-)-methyltransferase -
  DEIPE_RS02200 (Deipe_0445) - 477260..477718 (+) 459 WP_015234352.1 DUF5662 family protein -
  DEIPE_RS02205 (Deipe_0446) - 477883..478284 (+) 402 WP_015234353.1 hypothetical protein -
  DEIPE_RS02210 (Deipe_0447) - 478295..478552 (+) 258 WP_015234354.1 hypothetical protein -
  DEIPE_RS02215 (Deipe_0448) - 478530..478868 (+) 339 WP_157448736.1 hypothetical protein -
  DEIPE_RS02220 (Deipe_0449) - 478902..479087 (+) 186 WP_041230646.1 hypothetical protein -
  DEIPE_RS23695 (Deipe_0450) - 479105..479260 (+) 156 WP_015234356.1 hypothetical protein -
  DEIPE_RS02225 (Deipe_0451) - 479257..479532 (+) 276 WP_015234357.1 hypothetical protein -
  DEIPE_RS02230 (Deipe_0452) - 479543..479764 (+) 222 WP_015234358.1 hypothetical protein -
  DEIPE_RS02235 (Deipe_0453) - 479789..479977 (+) 189 WP_015234359.1 DUF1653 domain-containing protein -
  DEIPE_RS23700 - 480158..480313 (+) 156 WP_157448737.1 hypothetical protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 33394.62 Da        Isoelectric Point: 6.7670

>NTDB_id=55080 DEIPE_RS02175 WP_015234347.1 474605..475582(+) (comM) [Deinococcus peraridilitoris DSM 19664]
MLATATSVALVGVDALPVTVEVDVSPGLPAFNVVGLPDQAVSEARERVRAAIRNSGLPFPAARITVNLAPADLRKEGPVF
DLPIALGLLAASGHLPPQALHHLLTAGELALDGSLRTIPGAVNLAIKADSLGAQVLVPLGNASEAALIEGTQVFGAGTLL
EALSHLLGTAPIAPTQAVLPPPSTDCRVCLSDIKGQAQAKRALEIALAGGHNLLLIGSPGSGKTMLARRAASLLPPLSRA
EALEVMRIHSAAGLLTSRHNLRSEPPYRAPHSTVSDAGLIGGGSVPKPGEVSLAHRGVLFLDEFPEFSRKALESLRQPLE
DGCPV

Nucleotide


Download         Length: 978 bp        

>NTDB_id=55080 DEIPE_RS02175 WP_015234347.1 474605..475582(+) (comM) [Deinococcus peraridilitoris DSM 19664]
ATGCTGGCAACTGCAACCAGTGTCGCCCTGGTGGGCGTGGACGCCCTGCCCGTCACGGTCGAGGTCGATGTCTCTCCCGG
TCTGCCGGCTTTCAACGTAGTGGGACTGCCCGACCAGGCCGTCAGCGAAGCGCGTGAACGGGTACGGGCCGCCATTCGCA
ACAGCGGTCTGCCGTTTCCGGCAGCGCGCATCACCGTGAACCTGGCCCCGGCAGACCTGCGCAAGGAAGGCCCGGTGTTC
GATCTGCCCATCGCCCTGGGCCTGCTGGCCGCCAGTGGCCACCTGCCCCCGCAGGCGCTGCACCACCTGCTGACAGCGGG
GGAGCTGGCACTGGACGGCAGTTTGCGGACAATTCCTGGCGCCGTCAACCTGGCGATCAAAGCCGACAGCCTGGGGGCGC
AGGTGCTGGTGCCGCTCGGCAACGCTTCAGAAGCAGCCCTGATCGAGGGGACACAGGTGTTCGGGGCGGGCACGCTGCTC
GAAGCCCTGAGTCACCTGCTGGGAACAGCGCCCATCGCGCCGACGCAGGCGGTGCTGCCTCCTCCCTCCACCGATTGCAG
GGTGTGTCTCAGCGACATCAAAGGGCAGGCGCAAGCCAAACGGGCCCTCGAAATTGCGCTGGCAGGCGGACACAACCTGC
TGCTGATCGGCTCACCGGGCAGTGGAAAGACCATGCTGGCACGGCGGGCGGCGTCGCTGCTGCCTCCCCTCAGCCGTGCC
GAGGCACTGGAAGTGATGCGCATTCACAGCGCAGCCGGCCTGCTGACCAGCCGCCACAACCTGCGCAGTGAGCCTCCCTA
CCGGGCACCACACTCGACGGTTTCCGACGCCGGGCTGATTGGCGGAGGCAGTGTGCCCAAACCTGGTGAGGTCAGCCTCG
CCCACCGGGGCGTGCTGTTTCTCGACGAGTTCCCGGAATTTTCGCGCAAAGCGCTCGAAAGCCTGCGTCAGCCCCTCGAA
GACGGCTGTCCAGTTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-322)

Subunit ChlI of Mg-chelatase (ChlI)

(20-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9ZYN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.077

100

0.511
  comM Vibrio cholerae strain A1552

50.467

98.769

0.498
  comM Glaesserella parasuis strain SC1401

48.476

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.318

100

0.486
  comM Legionella pneumophila str. Paris

48.308

100

0.483
  comM Legionella pneumophila strain ERS1305867

48.308

100

0.483
  comM Haemophilus influenzae Rd KW20

46.462

100

0.465

Multiple sequence alignment