Detailed information NTG0550754

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LUY94_RS02085
• Genome accession: NZ_CP089485
• Coordinates: 384480..385484 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain E1139_IV_ST45
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 379480..390484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUY94_RS02050	mreD	380090..380620 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
LUY94_RS02055	rplU	380787..381095 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
LUY94_RS02060	-	381101..381421 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
LUY94_RS02065	rpmA	381433..381717 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
LUY94_RS02070	obgE	382072..383364 (+)	1293	WP_000496100.1	GTPase ObgE	-
LUY94_RS02075	-	383377..383832 (+)	456	WP_000368902.1	ACT domain-containing protein	-
LUY94_RS02080	ruvA	383846..384448 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
LUY94_RS02085	ruvB	384480..385484 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LUY94_RS02090	queA	385486..386511 (+)	1026	WP_061642009.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LUY94_RS02095	tgt	386534..387673 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
LUY94_RS02100	yajC	387692..387952 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=550754 LUY94_RS02085 WP_001005767.1 384480..385484(+) (ruvB) [Staphylococcus aureus strain E1139_IV_ST45]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=550754 LUY94_RS02085 WP_001005767.1 384480..385484(+) (ruvB) [Staphylococcus aureus strain E1139_IV_ST45]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAACGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGCGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515