Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J5P21_RS00245 Genome accession   NZ_CP072122
Coordinates   48704..49030 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain KSK1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 43704..54030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5P21_RS00220 (J5P21_00220) hemC 44321..45238 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  J5P21_RS00225 (J5P21_00225) - 45243..46010 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  J5P21_RS00230 (J5P21_00230) - 46019..46858 (+) 840 WP_045544628.1 hypothetical protein -
  J5P21_RS00235 (J5P21_00235) - 46868..48061 (+) 1194 WP_045544627.1 membrane protein -
  J5P21_RS00240 (J5P21_00240) - 48069..48509 (+) 441 WP_000661569.1 acyl-CoA thioesterase -
  J5P21_RS00245 (J5P21_00245) hns 48704..49030 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  J5P21_RS00250 (J5P21_00250) gspN 49363..50106 (+) 744 WP_045544626.1 type II secretion system protein N -
  J5P21_RS00255 (J5P21_00255) - 50106..50942 (+) 837 WP_045544625.1 type II secretion system protein N -
  J5P21_RS00260 (J5P21_00260) gspD 50984..53254 (+) 2271 WP_045544624.1 type II secretion system secretin GspD -
  J5P21_RS00265 (J5P21_00265) - 53295..53924 (+) 630 WP_045544623.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=550753 J5P21_RS00245 WP_000801427.1 48704..49030(+) (hns) [Acinetobacter baumannii strain KSK1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=550753 J5P21_RS00245 WP_000801427.1 48704..49030(+) (hns) [Acinetobacter baumannii strain KSK1]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1