Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUY94_RS02080 Genome accession   NZ_CP089485
Coordinates   383846..384448 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain E1139_IV_ST45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 378846..389448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY94_RS02040 - 378929..379048 (+) 120 WP_000840602.1 hypothetical protein -
  LUY94_RS02045 mreC 379248..380090 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUY94_RS02050 mreD 380090..380620 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  LUY94_RS02055 rplU 380787..381095 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  LUY94_RS02060 - 381101..381421 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LUY94_RS02065 rpmA 381433..381717 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUY94_RS02070 obgE 382072..383364 (+) 1293 WP_000496100.1 GTPase ObgE -
  LUY94_RS02075 - 383377..383832 (+) 456 WP_000368902.1 ACT domain-containing protein -
  LUY94_RS02080 ruvA 383846..384448 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LUY94_RS02085 ruvB 384480..385484 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUY94_RS02090 queA 385486..386511 (+) 1026 WP_061642009.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUY94_RS02095 tgt 386534..387673 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUY94_RS02100 yajC 387692..387952 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=550753 LUY94_RS02080 WP_000271547.1 383846..384448(+) (ruvA) [Staphylococcus aureus strain E1139_IV_ST45]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=550753 LUY94_RS02080 WP_000271547.1 383846..384448(+) (ruvA) [Staphylococcus aureus strain E1139_IV_ST45]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425