Detailed information NTG0550582

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LUZ05_RS02090
• Genome accession: NZ_CP089481
• Coordinates: 385224..386228 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain E1038_IIV_ST8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 380224..391228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUZ05_RS02055	mreD	380834..381364 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
LUZ05_RS02060	rplU	381531..381839 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
LUZ05_RS02065	-	381845..382165 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
LUZ05_RS02070	rpmA	382177..382461 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
LUZ05_RS02075	obgE	382816..384108 (+)	1293	WP_000496100.1	GTPase ObgE	-
LUZ05_RS02080	-	384121..384576 (+)	456	WP_000368902.1	ACT domain-containing protein	-
LUZ05_RS02085	ruvA	384590..385192 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
LUZ05_RS02090	ruvB	385224..386228 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LUZ05_RS02095	queA	386230..387255 (+)	1026	WP_061642009.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LUZ05_RS02100	tgt	387278..388417 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
LUZ05_RS02105	yajC	388436..388696 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=550582 LUZ05_RS02090 WP_001005767.1 385224..386228(+) (ruvB) [Staphylococcus aureus strain E1038_IIV_ST8]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=550582 LUZ05_RS02090 WP_001005767.1 385224..386228(+) (ruvB) [Staphylococcus aureus strain E1038_IIV_ST8]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAACGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGCGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515