Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LUZ05_RS02085 Genome accession   NZ_CP089481
Coordinates   384590..385192 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain E1038_IIV_ST8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 379590..390192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ05_RS02045 - 379673..379792 (+) 120 WP_000840602.1 hypothetical protein -
  LUZ05_RS02050 mreC 379992..380834 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  LUZ05_RS02055 mreD 380834..381364 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  LUZ05_RS02060 rplU 381531..381839 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  LUZ05_RS02065 - 381845..382165 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  LUZ05_RS02070 rpmA 382177..382461 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  LUZ05_RS02075 obgE 382816..384108 (+) 1293 WP_000496100.1 GTPase ObgE -
  LUZ05_RS02080 - 384121..384576 (+) 456 WP_000368902.1 ACT domain-containing protein -
  LUZ05_RS02085 ruvA 384590..385192 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  LUZ05_RS02090 ruvB 385224..386228 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LUZ05_RS02095 queA 386230..387255 (+) 1026 WP_061642009.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LUZ05_RS02100 tgt 387278..388417 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  LUZ05_RS02105 yajC 388436..388696 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=550581 LUZ05_RS02085 WP_000271547.1 384590..385192(+) (ruvA) [Staphylococcus aureus strain E1038_IIV_ST8]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=550581 LUZ05_RS02085 WP_000271547.1 384590..385192(+) (ruvA) [Staphylococcus aureus strain E1038_IIV_ST8]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425