Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ANACY_RS01920 Genome accession   NC_019771
Coordinates   483289..483654 (-) Length   121 a.a.
NCBI ID   WP_015212647.1    Uniprot ID   -
Organism   Anabaena cylindrica PCC 7122     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478289..488654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANACY_RS01910 (Anacy_0388) - 479536..482712 (-) 3177 WP_015212645.1 methyl-accepting chemotaxis protein -
  ANACY_RS01915 (Anacy_0389) - 482729..483256 (-) 528 WP_015212646.1 chemotaxis protein CheW -
  ANACY_RS01920 (Anacy_0390) pilH 483289..483654 (-) 366 WP_015212647.1 response regulator Machinery gene
  ANACY_RS01925 (Anacy_0391) - 483854..485059 (-) 1206 WP_015212648.1 response regulator -
  ANACY_RS01930 (Anacy_0392) hmpF 485440..487191 (+) 1752 WP_015212649.1 pilus motility taxis protein HmpF -
  ANACY_RS01935 (Anacy_0393) tilS 487231..488244 (-) 1014 WP_015212650.1 tRNA lysidine(34) synthetase TilS -
  ANACY_RS01940 (Anacy_0394) - 488269..488559 (-) 291 WP_015212651.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13353.54 Da        Isoelectric Point: 5.1744

>NTDB_id=55009 ANACY_RS01920 WP_015212647.1 483289..483654(-) (pilH) [Anabaena cylindrica PCC 7122]
MSTVLIVEDSIAQREMITDLLKASGLTVAHACDGVEALEAIQSKPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=55009 ANACY_RS01920 WP_015212647.1 483289..483654(-) (pilH) [Anabaena cylindrica PCC 7122]
ATGAGTACAGTTCTGATTGTTGAAGACAGTATTGCTCAAAGGGAGATGATTACAGACCTCCTGAAAGCAAGTGGTTTAAC
GGTTGCTCATGCTTGTGACGGAGTAGAAGCTTTAGAAGCAATTCAAAGCAAACCTCCCGATTTAGTAGTTTTGGATATTG
TCATGCCCCGCATGAATGGTTACGAACTGTGTCGGCGGTTAAAATCTGATCCTAAAACCCAAAATGTGCCTGTAGTCATG
TGTTCTTCCAAAGGGGAAGAATTTGATCGCTACTGGGGAATGAAACAGGGAGCCGACGCTTACATAGCCAAACCATTTCA
ACCAACTGAATTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilL-C Synechocystis sp. PCC 6803

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

37.5

99.174

0.372

Multiple sequence alignment