Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BEST7003_RS13315 | Genome accession | NZ_AP012496 |
| Coordinates | 2666941..2667945 (-) | Length | 334 a.a. |
| NCBI ID | WP_003229718.1 | Uniprot ID | O32055 |
| Organism | Bacillus subtilis BEST7003 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2661941..2672945
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEST7003_RS13285 (BEST7003_2642) | yrbG | 2662915..2663571 (-) | 657 | WP_004398801.1 | DUF421 domain-containing protein | - |
| BEST7003_RS13290 (BEST7003_2643) | - | 2663769..2664158 (+) | 390 | WP_004398667.1 | TIGR04086 family membrane protein | - |
| BEST7003_RS13295 (BEST7003_2644) | yajC | 2664215..2664481 (-) | 267 | WP_004398708.1 | preprotein translocase subunit YajC | - |
| BEST7003_RS13300 (BEST7003_2645) | tgt | 2664518..2665663 (-) | 1146 | WP_003229725.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| BEST7003_RS13305 (BEST7003_2646) | queA | 2665690..2666718 (-) | 1029 | WP_003229723.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| BEST7003_RS13310 (BEST7003_2647) | yrzS | 2666748..2666948 (-) | 201 | WP_003222669.1 | DUF2905 domain-containing protein | - |
| BEST7003_RS13315 (BEST7003_2648) | ruvB | 2666941..2667945 (-) | 1005 | WP_003229718.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BEST7003_RS13320 (BEST7003_2649) | ruvA | 2667956..2668561 (-) | 606 | WP_003229717.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| BEST7003_RS13325 (BEST7003_2650) | bofC | 2668700..2669212 (-) | 513 | WP_003229715.1 | sporulation cell-cell signaling protein BofC | - |
| BEST7003_RS13330 (BEST7003_2651) | csbX | 2669260..2670567 (-) | 1308 | WP_003246197.1 | MFS transporter | - |
| BEST7003_RS13335 (BEST7003_2652) | iolG | 2670638..2671663 (-) | 1026 | WP_004398990.1 | inositol 2-dehydrogenase | - |
| BEST7003_RS13340 (BEST7003_2653) | yrzF | 2671901..2672548 (+) | 648 | WP_003246159.1 | phosphotransferase | - |
| BEST7003_RS21890 (BEST7003_2654) | - | 2672594..2672716 (-) | 123 | WP_003229707.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37467.78 Da Isoelectric Point: 5.1631
>NTDB_id=55005 BEST7003_RS13315 WP_003229718.1 2666941..2667945(-) (ruvB) [Bacillus subtilis BEST7003]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD
Nucleotide
Download Length: 1005 bp
>NTDB_id=55005 BEST7003_RS13315 WP_003229718.1 2666941..2667945(-) (ruvB) [Bacillus subtilis BEST7003]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGCCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTAATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGCCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTAATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.429 |
97.605 |
0.59 |
| ruvB | Streptococcus pneumoniae R6 |
60.429 |
97.605 |
0.59 |
| ruvB | Streptococcus pneumoniae D39 |
60.429 |
97.605 |
0.59 |
| ruvB | Synechocystis sp. PCC 6803 |
57.143 |
98.503 |
0.563 |
| ruvB | Helicobacter pylori 26695 |
52.744 |
98.204 |
0.518 |