Detailed information NTG0055006

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: BEST7003_RS13320
• Genome accession: NZ_AP012496
• Coordinates: 2667956..2668561 (-)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis BEST7003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2662956..2673561

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEST7003_RS13290 (BEST7003_2643)	-	2663769..2664158 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
BEST7003_RS13295 (BEST7003_2644)	yajC	2664215..2664481 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
BEST7003_RS13300 (BEST7003_2645)	tgt	2664518..2665663 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
BEST7003_RS13305 (BEST7003_2646)	queA	2665690..2666718 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BEST7003_RS13310 (BEST7003_2647)	yrzS	2666748..2666948 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
BEST7003_RS13315 (BEST7003_2648)	ruvB	2666941..2667945 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BEST7003_RS13320 (BEST7003_2649)	ruvA	2667956..2668561 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
BEST7003_RS13325 (BEST7003_2650)	bofC	2668700..2669212 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
BEST7003_RS13330 (BEST7003_2651)	csbX	2669260..2670567 (-)	1308	WP_003246197.1	MFS transporter	-
BEST7003_RS13335 (BEST7003_2652)	iolG	2670638..2671663 (-)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
BEST7003_RS13340 (BEST7003_2653)	yrzF	2671901..2672548 (+)	648	WP_003246159.1	phosphotransferase	-
BEST7003_RS21890 (BEST7003_2654)	-	2672594..2672716 (-)	123	WP_003229707.1	hypothetical protein	-
BEST7003_RS21895 (BEST7003_2655)	yrzH	2672801..2673091 (+)	291	WP_003246047.1	DUF5412 family protein	-
BEST7003_RS20955 (BEST7003_2656)	-	2673098..2673238 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=55006 BEST7003_RS13320 WP_003229717.1 2667956..2668561(-) (ruvA) [Bacillus subtilis BEST7003]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=55006 BEST7003_RS13320 WP_003229717.1 2667956..2668561(-) (ruvA) [Bacillus subtilis BEST7003]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408