Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CRI9333_RS05750 Genome accession   NC_019753
Coordinates   1346772..1347137 (-) Length   121 a.a.
NCBI ID   WP_015202219.1    Uniprot ID   K9VX72
Organism   Crinalium epipsammum PCC 9333     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341772..1352137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI9333_RS05740 (Cri9333_1191) - 1343190..1346165 (-) 2976 WP_015202217.1 methyl-accepting chemotaxis protein -
  CRI9333_RS05745 (Cri9333_1192) - 1346235..1346765 (-) 531 WP_015202218.1 chemotaxis protein CheW -
  CRI9333_RS05750 (Cri9333_1193) pilH 1346772..1347137 (-) 366 WP_015202219.1 response regulator transcription factor Machinery gene
  CRI9333_RS05755 (Cri9333_1194) - 1347274..1348548 (-) 1275 WP_015202220.1 response regulator -
  CRI9333_RS05760 (Cri9333_1195) - 1349070..1349456 (+) 387 WP_041225956.1 VOC family protein -
  CRI9333_RS05765 (Cri9333_1196) - 1349677..1350306 (-) 630 WP_015202222.1 hypothetical protein -
  CRI9333_RS25585 (Cri9333_1197) - 1350604..1350765 (-) 162 Protein_1209 transposase -
  CRI9333_RS05770 (Cri9333_1198) - 1350989..1351900 (-) 912 WP_015202223.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13446.70 Da        Isoelectric Point: 6.3320

>NTDB_id=54956 CRI9333_RS05750 WP_015202219.1 1346772..1347137(-) (pilH) [Crinalium epipsammum PCC 9333]
MSTVLVVEDSTAQRTMIKDLLKSSGLIVTEATDGVEALEQILKSRPDIVVLDIVMPRMNGYEVCRRLKADPKTQSVPIVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54956 CRI9333_RS05750 WP_015202219.1 1346772..1347137(-) (pilH) [Crinalium epipsammum PCC 9333]
ATGAGTACAGTTCTGGTTGTAGAAGACAGTACCGCACAACGGACGATGATCAAAGACTTGCTAAAAAGTAGTGGGTTAAT
AGTTACTGAGGCAACTGATGGTGTCGAAGCCTTAGAACAAATCCTTAAATCTCGCCCAGACATAGTGGTCTTAGATATTG
TCATGCCCAGGATGAATGGCTACGAGGTTTGTCGGCGGCTCAAAGCCGATCCCAAAACCCAAAGTGTTCCTATAGTGATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTATTGGGGAATGAAGCAGGGCGCAGATGCCTATATCGCCAAGCCATTTCA
ACCAACAGAACTAATTGGCACTGTTAAACAGCTACTACGAGGCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9VX72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.901

100

0.719
  micA Streptococcus pneumoniae Cp1015

42.5

99.174

0.421
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment