Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   J5N61_RS01020 Genome accession   NZ_CP071973
Coordinates   217311..218438 (-) Length   375 a.a.
NCBI ID   WP_075695884.1    Uniprot ID   A0AAW5RAM0
Organism   Acinetobacter junii strain INC8271     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 212311..223438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS00990 (J5N61_00990) - 212920..213120 (-) 201 Protein_192 DNA repair protein -
  J5N61_RS01000 (J5N61_01000) - 214359..214853 (-) 495 Protein_194 phospholipase D family protein -
  J5N61_RS01005 (J5N61_01005) - 214958..215503 (-) 546 WP_004905532.1 glutathione peroxidase -
  J5N61_RS01010 (J5N61_01010) - 215647..216309 (+) 663 Protein_196 DMT family transporter -
  J5N61_RS01015 (J5N61_01015) - 216704..217273 (-) 570 WP_125272793.1 L-threonylcarbamoyladenylate synthase -
  J5N61_RS01020 (J5N61_01020) dprA 217311..218438 (-) 1128 WP_075695884.1 DNA-processing protein DprA Machinery gene
  J5N61_RS01025 (J5N61_01025) tsaP 218448..219599 (-) 1152 WP_004905510.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  J5N61_RS01030 (J5N61_01030) def 219720..220250 (+) 531 WP_004905508.1 peptide deformylase -
  J5N61_RS01035 (J5N61_01035) - 220272..220709 (+) 438 WP_042892177.1 DUF2946 family protein -
  J5N61_RS01040 (J5N61_01040) - 220783..222879 (+) 2097 WP_125272748.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 42308.27 Da        Isoelectric Point: 7.1915

>NTDB_id=549534 J5N61_RS01020 WP_075695884.1 217311..218438(-) (dprA) [Acinetobacter junii strain INC8271]
MLNQLSPRHYHTVLVWYLVQHSLSSFHKILKHFGSCEQATQSHRFSEWYQLGLHANHLKRLEEFQSTQGQKQFEQIVQLI
LKHCDFIVTPHDIDYPKQLIPYADHPPILFGQGHLQALLQPQIALVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLAHG
IDEAAHRGGLAHHRSIAVTGTGLDTVYPTQNKPLAQQIAQSGAIITEFLPTTLPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAANQGKMVFAIPGHIYSEYHQGCHQLIREGAVLVDHPEQIIEDLALPTHWQTQQHTKDAVEQHSTLPPHL
ISLYQNLDWIGQDLDLLSQRYPAPISEITSQLMELELLGLCIQQGGRYLRCRPIH

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=549534 J5N61_RS01020 WP_075695884.1 217311..218438(-) (dprA) [Acinetobacter junii strain INC8271]
ATGTTGAATCAATTATCACCCCGCCACTACCATACCGTGTTGGTGTGGTATTTGGTTCAACACTCCCTATCCAGCTTTCA
CAAAATTCTGAAACATTTTGGGAGTTGTGAACAAGCAACACAAAGCCACCGATTCTCTGAGTGGTATCAACTCGGTTTAC
ATGCAAACCATCTAAAACGTTTAGAAGAATTTCAAAGTACACAAGGTCAAAAACAATTTGAACAGATAGTTCAACTGATT
TTGAAGCACTGTGACTTTATCGTGACGCCACACGATATTGACTATCCCAAACAACTCATACCTTATGCAGACCATCCACC
CATATTATTTGGTCAAGGTCATCTTCAAGCTTTACTGCAACCGCAAATTGCATTGGTGGGGAGCCGCAAACCTAGTCCAC
ATGGTCGCCAAGTGGCTTATGATTTTGCTTATTACCTTAGTGAGAAAGGATTTTATATTACCAGTGGTCTTGCACATGGG
ATTGATGAAGCTGCTCATCGCGGTGGCTTAGCACATCATCGAAGCATCGCTGTCACAGGTACGGGGTTAGATACTGTTTA
TCCAACTCAGAATAAACCATTGGCACAGCAAATTGCTCAATCAGGTGCCATCATCACAGAGTTTCTTCCTACGACTCTCC
CATTACAACAACATTTTCCACGACGAAATCGGATTGTTAGTGGCTTAAGTTTAGGTGTCTTAGTGGTTGAAGCAGCACTA
AAAAGTGGATCTTTGATTACGGCGAATGAAGCAGCCAATCAAGGTAAAATGGTATTTGCTATCCCTGGTCATATTTACAG
TGAATACCATCAAGGCTGTCATCAACTTATTCGTGAAGGGGCTGTTTTGGTCGATCATCCTGAACAGATTATTGAAGATT
TAGCATTACCAACACATTGGCAGACCCAACAACACACTAAAGATGCAGTAGAACAGCACTCAACACTCCCACCACATTTG
ATTAGCTTGTATCAGAATTTAGATTGGATTGGACAGGATTTAGATTTACTCAGCCAACGCTATCCAGCGCCGATCTCTGA
AATCACATCTCAATTAATGGAATTAGAGTTACTAGGTTTGTGCATACAACAAGGTGGTCGCTATTTACGTTGTCGCCCAA
TCCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

72.8

100

0.728

  dprA Acinetobacter baumannii strain A118

71.733

100

0.717

  dprA Acinetobacter baylyi ADP1

69.474

100

0.704

  dprA Vibrio cholerae strain A1552

42.655

94.4

0.403