Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CAL6303_RS16835 Genome accession   NC_019751
Coordinates   4098546..4098911 (+) Length   121 a.a.
NCBI ID   WP_015199018.1    Uniprot ID   K9V3H1
Organism   Calothrix sp. PCC 6303     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4093546..4103911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAL6303_RS16820 (Cal6303_3454) tilS 4093741..4094772 (+) 1032 WP_041740716.1 tRNA lysidine(34) synthetase TilS -
  CAL6303_RS16825 (Cal6303_3455) hmpF 4094769..4096502 (-) 1734 WP_015199016.1 pilus motility taxis protein HmpF -
  CAL6303_RS16830 (Cal6303_3456) - 4097082..4098308 (+) 1227 WP_015199017.1 response regulator -
  CAL6303_RS16835 (Cal6303_3457) pilH 4098546..4098911 (+) 366 WP_015199018.1 response regulator transcription factor Machinery gene
  CAL6303_RS16840 (Cal6303_3458) - 4098920..4099450 (+) 531 WP_015199019.1 chemotaxis protein CheW -
  CAL6303_RS16845 (Cal6303_3459) - 4099467..4102388 (+) 2922 WP_015199020.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13323.50 Da        Isoelectric Point: 4.8604

>NTDB_id=54947 CAL6303_RS16835 WP_015199018.1 4098546..4098911(+) (pilH) [Calothrix sp. PCC 6303]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGLEALEVILSAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54947 CAL6303_RS16835 WP_015199018.1 4098546..4098911(+) (pilH) [Calothrix sp. PCC 6303]
ATGAGCACAGTTCTGATTGTGGAAGACAGTATCGCCCAAAGGGAAATGATCACAGACCTACTGAAAGCGAGCGGCTTGAC
AGTTACCCATGCCAGTGACGGACTCGAAGCGTTAGAAGTAATTTTGAGCGCACCTCCTGACTTAGTAGTATTGGATATTG
TGATGCCTCGAATGAATGGTTATGAAGTTTGTCGCAGGCTGAAATCTGACCCCAAAACCCAAAACGTACCCGTGGTGATG
TGTTCATCAAAAGGAGAAGAATTTGATCGTTATTGGGGAATGAAGCAGGGAGCAGATGCTTATATAGCAAAACCCTTTCA
ACCAACCGAGTTGGTAGGAACAGTTAAACAACTGCTGCGAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9V3H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.033

100

0.76
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  pilL-C Synechocystis sp. PCC 6803

38.017

100

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38

Multiple sequence alignment