Detailed information NTG0548881

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: J4H94_RS02795
• Genome accession: NZ_CP071899
• Coordinates: 617772..618836 (+)
• Length: 354 a.a.
• NCBI ID: WP_208217409.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain TPA3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 612772..623836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4H94_RS02780 (J4H94_02780)	-	612898..613692 (+)	795	WP_208217408.1	thermonuclease family protein	-
J4H94_RS02785 (J4H94_02785)	-	613836..615104 (+)	1269	WP_102839582.1	malic enzyme-like NAD(P)-binding protein	-
J4H94_RS02790 (J4H94_02790)	-	615170..617590 (-)	2421	WP_208218582.1	penicillin-binding protein 1A	-
J4H94_RS02795 (J4H94_02795)	comM	617772..618836 (+)	1065	WP_208217409.1	pilus assembly protein PilM	Machinery gene
J4H94_RS02800 (J4H94_02800)	-	618836..619408 (+)	573	WP_063539613.1	PilN domain-containing protein	-
J4H94_RS02805 (J4H94_02805)	pilO	619405..620028 (+)	624	WP_208217410.1	type 4a pilus biogenesis protein PilO	-
J4H94_RS02810 (J4H94_02810)	pilP	620025..620552 (+)	528	WP_102839586.1	type 4a pilus biogenesis lipoprotein PilP	-
J4H94_RS02815 (J4H94_02815)	pilQ	620606..622708 (+)	2103	WP_208217411.1	type IV pilus secretin PilQ	Machinery gene
J4H94_RS02820 (J4H94_02820)	aroK	622714..623259 (+)	546	WP_208217412.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37796.23 Da
• Isoelectric Point: 4.6346

>NTDB_id=548881 J4H94_RS02795 WP_208217409.1 617772..618836(+) (comM) [Stutzerimonas frequens strain TPA3]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKTIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEVREVALAL
AGLTAKVVDVEAYALERSYDLLAPQLGSAHGELTVAVVDIGATMTTLSVLHNGRTIYSREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHLIQQKIGTQTLVANP
FADMALSSKVNAGALASDAPSLMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=548881 J4H94_RS02795 WP_208217409.1 617772..618836(+) (comM) [Stutzerimonas frequens strain TPA3]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTTCTCGAATT
AAGTCGATCGGGGAACCGCTACCGGGTTGAGGCTTATGCGGTTGAGCCGCTCCCACCAAATGCCGTGGTCGAAAAGAACA
TCGCTGAACTGGAAGGCGTTGGCCAGGCTCTGCAACGCGTGGTCGCAAAGGCTAAGACCGGCTGCAAGTCAGCCGTGGTA
GCTGTCTCCGGCTCAGCGGTGATCACCAAGACGATCGAGATGGACGCCGGGCTGTCCGACGAGGAGCTGGAAAATCAACT
GAAGATCGAAGCCGACCAATATATTCCCTATCCGTTGGAAGAGGTGGCGATCGACTTTGAGGTCCAGGGGCCCGCGCCGC
GTGCGCCCGGCCGGGTCGAGGTTTTGCTCGCTGCCTGTCGCAAGGAAAACGTCGAGGTGCGCGAGGTGGCGCTGGCCCTG
GCCGGCCTCACCGCGAAGGTCGTTGATGTCGAGGCCTATGCGCTCGAGCGCTCCTATGACCTTCTGGCGCCGCAGCTGGG
GAGCGCGCATGGTGAACTGACCGTCGCCGTCGTGGATATCGGCGCAACGATGACGACTCTGAGTGTCCTGCATAACGGAC
GCACCATATACAGTCGTGAGCAATTGTTCGGGGGGCGGCAGCTGACGGAGGAAATCCAACGCCGTTATGGGCTTTCACAA
GAGGAGGCTGGCCTCGCTAAAAAGCAGGGAGGGCTTCCTGATGACTACGACAGTGAAGTTTTGCTTCCGTTCAAAGAAGC
GGTCGTTCAGCAGGTCTCACGCTCGCTGCAGTTCTTCTTCGCTGCTGGGCAGTTTCATGATGTCGATTGCATTCTGCTTG
CTGGTGGAACGGCTTCCATCCCGGGTCTTGATCATCTCATTCAGCAGAAGATCGGCACCCAGACTCTAGTTGCCAACCCG
TTTGCCGATATGGCTTTGAGTAGCAAGGTCAACGCAGGCGCGCTGGCCAGTGATGCGCCCTCGCTGATGATTGCGTGTGG
GTTGGCGCTAAGGAGTTTCGACTGA

Domains

Predicted by InterProScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	56.497	100	0.565
pilM	Acinetobacter baumannii D1279779	56.497	100	0.565
comM	Acinetobacter baylyi ADP1	53.672	100	0.537
pilM	Legionella pneumophila strain ERS1305867	46.893	100	0.469