Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J4H94_RS02525 Genome accession   NZ_CP071899
Coordinates   561136..562632 (-) Length   498 a.a.
NCBI ID   WP_102839550.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain TPA3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 556136..567632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4H94_RS02515 (J4H94_02515) - 557361..558998 (+) 1638 WP_208218579.1 EAL domain-containing protein -
  J4H94_RS02520 (J4H94_02520) betT 559028..561004 (-) 1977 WP_152480766.1 choline BCCT transporter BetT -
  J4H94_RS02525 (J4H94_02525) comM 561136..562632 (-) 1497 WP_102839550.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J4H94_RS02530 (J4H94_02530) - 562669..562929 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  J4H94_RS02535 (J4H94_02535) glnK 563326..563664 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  J4H94_RS02540 (J4H94_02540) - 563703..565019 (+) 1317 WP_208217388.1 ammonium transporter -
  J4H94_RS02545 (J4H94_02545) - 565142..566392 (+) 1251 WP_014595677.1 ammonium transporter -
  J4H94_RS02550 (J4H94_02550) - 566494..566919 (+) 426 WP_011911738.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  J4H94_RS02555 (J4H94_02555) sutA 566997..567326 (+) 330 WP_011911739.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53133.91 Da        Isoelectric Point: 7.9499

>NTDB_id=548879 J4H94_RS02525 WP_102839550.1 561136..562632(-) (comM) [Stutzerimonas frequens strain TPA3]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILSSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPNERLDKLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAEARQRQLARQGCANAFLDLAGLRSHCQLGADDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
ISRQHLAEALQYRPGSQS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=548879 J4H94_RS02525 WP_102839550.1 561136..562632(-) (comM) [Stutzerimonas frequens strain TPA3]
ATGTCCCTGGCCATCGTTCATAGCCGCGCGCAGATCGGCGTCGAAGCGCCGGCGGTGACCGTCGAAGCCCATCTGGCCAA
CGGTCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAGCTCCGGCTTCGATTTTCCTGCACGACGCATCACCCTCAACCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGCCGC
TTCGACCTGTCCATCGCCCTGGGCATCCTTGCCGCCAGCGGCCAGCTGCCCAACGAGCGGCTGGACAAACTGGAGTGCCT
CGGCGAGCTGGCCCTGTCCGGCGCCTTGCGCCCTGTGCAGGGCGTGCTGCCGGCCGCCCTTGCCGCACGTGCCGCCGGCC
GTGCACTGCTGGTGCCGCGGGCCAACGCCGAGGAAGCCAGCCTCGCCTCGGGCCTGACCGTCTATGCCGCCGAACACTTG
CTCGAGGTTGCCGCGCACTTCAACGGCGTCACGCCACTCGAGCCCTATGTTGCCCAGGGCCTGCTACGGCAGGTCCAGCC
TTACCCTGACCTGGCCGACGTGCAGGGCCAGCAGGCGGCCAAGCGCGGCCTGCTGATCGCCGCAGCCGGTGCGCACAACC
TGCTGTTTTCCGGGCCACCCGGTACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCGCCGCTGGACGAA
CAGGAGGCGCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGCCATAGTCCTCTCGAACATTGGCCGCAACGCCCATTCCG
CCAGCCCCATCACAGTGCATCAGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGTGAAATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAACTGCCTGAGTTCGATCGCAAGGTACTCGAGGTCCTGCGCGAGCCGCTGGAATCC
GGCCATATCGTCATCGCCAGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGCTTTCAGCTCGTCGCGGCAATGAATCCCTG
CCCCTGTGGCTACCTGGGCGACCCCAACGGACGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTGGCGCGCGAAGCAACCGCCCTCAACGCACCGCCGCAAACG
GGCCAGAGCAGCGCGGTGCTGGCCGCACAGGTAGCCGAGGCACGGCAGCGGCAGCTCGCCCGTCAGGGCTGCGCCAACGC
CTTTCTCGATCTGGCCGGCCTGCGCAGCCATTGCCAGCTCGGTGCCGACGACCAGGCCTGGCTGGAACGCGCCTGCGAAC
GCCTCGCGCTGTCGTTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCACGCACCCTCGCCGATCTGGAGCAGGCCGAGCGA
ATCAGCCGTCAGCACCTTGCCGAAGCGCTGCAGTACCGCCCCGGCAGTCAAAGCTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.378

100

0.558
  comM Haemophilus influenzae Rd KW20

55.09

100

0.554
  comM Legionella pneumophila str. Paris

50.791

100

0.516
  comM Legionella pneumophila strain ERS1305867

50.791

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47