Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J4N42_RS04910 Genome accession   NZ_CP071859
Coordinates   1044647..1044937 (+) Length   96 a.a.
NCBI ID   WP_252030189.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1039647..1049937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS04895 (J4N42_04895) lon 1039683..1042034 (+) 2352 WP_252030183.1 endopeptidase La -
  J4N42_RS04900 (J4N42_04900) - 1042220..1042498 (+) 279 WP_265687356.1 HU family DNA-binding protein -
  J4N42_RS04905 (J4N42_04905) ppiD 1042655..1044514 (+) 1860 WP_252030187.1 peptidylprolyl isomerase -
  J4N42_RS04910 (J4N42_04910) comEA 1044647..1044937 (+) 291 WP_252030189.1 ComEA family DNA-binding protein Machinery gene
  J4N42_RS04915 (J4N42_04915) cmk 1045125..1045805 (+) 681 WP_252030191.1 (d)CMP kinase -
  J4N42_RS04920 (J4N42_04920) rpsA 1045916..1047586 (+) 1671 WP_252030193.1 30S ribosomal protein S1 -
  J4N42_RS04925 (J4N42_04925) ihfB 1047706..1047987 (+) 282 WP_252030196.1 integration host factor subunit beta -
  J4N42_RS04930 (J4N42_04930) - 1048131..1048406 (+) 276 WP_252030198.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  J4N42_RS04935 (J4N42_04935) lapB 1048426..1049595 (+) 1170 WP_252030199.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10277.71 Da        Isoelectric Point: 4.4883

>NTDB_id=548504 J4N42_RS04910 WP_252030189.1 1044647..1044937(+) (comEA) [Vibrio sp. SCSIO 43135]
MYFKSIVLAALLMMGVSSGLAVADSDQYEGIEITVNINQASADELATLLKGIGIKKAQAIVDYRDNNGNFKSADELVGVS
GIGQTTVDKNRERIQL

Nucleotide


Download         Length: 291 bp        

>NTDB_id=548504 J4N42_RS04910 WP_252030189.1 1044647..1044937(+) (comEA) [Vibrio sp. SCSIO 43135]
ATGTACTTTAAATCTATTGTTCTTGCTGCCTTGTTAATGATGGGCGTGTCGAGTGGGTTGGCAGTTGCGGATAGTGACCA
ATACGAAGGTATCGAAATTACGGTCAACATCAACCAAGCGAGCGCCGACGAATTGGCTACGTTGCTAAAAGGCATCGGAA
TCAAAAAAGCACAAGCGATAGTGGATTACCGAGATAATAACGGAAACTTTAAGTCGGCAGATGAGCTGGTTGGTGTTTCT
GGAATAGGCCAAACAACGGTTGATAAGAACCGAGAACGCATACAACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(34-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

56.383

97.917

0.552
  comEA Vibrio cholerae strain A1552

56.383

97.917

0.552
  comEA Vibrio parahaemolyticus RIMD 2210633

55.319

97.917

0.542
  comEA Vibrio campbellii strain DS40M4

52.747

94.792

0.5
  comEA Acinetobacter baylyi ADP1

44.872

81.25

0.365