Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4N42_RS01805 Genome accession   NZ_CP071859
Coordinates   367515..368063 (+) Length   182 a.a.
NCBI ID   WP_252029281.1    Uniprot ID   A0A9X3CB54
Organism   Vibrio sp. SCSIO 43135     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 362515..373063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS01790 (J4N42_01790) uvrA 362628..365450 (-) 2823 WP_252029275.1 excinuclease ABC subunit UvrA -
  J4N42_RS01795 (J4N42_01795) galU 365594..366466 (-) 873 WP_252029277.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N42_RS01800 (J4N42_01800) qstR 366581..367228 (-) 648 WP_252029279.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N42_RS01805 (J4N42_01805) ssb 367515..368063 (+) 549 WP_252029281.1 single-stranded DNA-binding protein Machinery gene
  J4N42_RS01810 (J4N42_01810) csrD 368196..370202 (+) 2007 WP_252029283.1 RNase E specificity factor CsrD -
  J4N42_RS01815 (J4N42_01815) - 370216..371655 (+) 1440 WP_252029285.1 MSHA biogenesis protein MshI -
  J4N42_RS01820 (J4N42_01820) gspM 371652..372296 (+) 645 WP_252029287.1 type II secretion system protein GspM -
  J4N42_RS01825 (J4N42_01825) - 372289..372615 (+) 327 WP_252029289.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20059.22 Da        Isoelectric Point: 6.2367

>NTDB_id=548494 J4N42_RS01805 WP_252029281.1 367515..368063(+) (ssb) [Vibrio sp. SCSIO 43135]
MASRGVNKVILVGNLGNDPEIRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRGQGGGQPQGMGGQPQQQGGWGQPQQPAMQHQPAQQHQQPAQKQ
APQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=548494 J4N42_RS01805 WP_252029281.1 367515..368063(+) (ssb) [Vibrio sp. SCSIO 43135]
ATGGCAAGCCGTGGAGTAAACAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCTGTGGCAAATATCACCATTGCGACGTCGGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGTGAGAAAACGG
AATGGCACCGTGTGGCATTATTCGGCAAACTTGCAGAAGTTGCTGGCGAATATCTGCGTAAAGGTTCTCAAGTTTATGTT
GAAGGTCAGTTACAAACTCGTAAGTGGCAAGACCAAAGCGGTCAGGACCGTTACACAACAGAAGTCGTTGTTCAAGGTTT
TAACGGCGTGATGCAGATGCTAGGTGGTCGTGGTCAAGGTGGAGGTCAACCACAAGGCATGGGCGGTCAACCTCAGCAAC
AAGGTGGTTGGGGACAGCCTCAGCAACCAGCGATGCAACATCAGCCAGCTCAACAGCATCAACAACCGGCTCAAAAGCAA
GCTCCGCAACAAGCGCAGCCACAATACAATGAGCCACCAATGGATTTTGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.065

100

0.83
  ssb Glaesserella parasuis strain SC1401

56.186

100

0.599
  ssb Neisseria meningitidis MC58

45.699

100

0.467
  ssb Neisseria gonorrhoeae MS11

45.699

100

0.467