Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J4N42_RS01800 Genome accession   NZ_CP071859
Coordinates   366581..367228 (-) Length   215 a.a.
NCBI ID   WP_252029279.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 361581..372228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS01790 (J4N42_01790) uvrA 362628..365450 (-) 2823 WP_252029275.1 excinuclease ABC subunit UvrA -
  J4N42_RS01795 (J4N42_01795) galU 365594..366466 (-) 873 WP_252029277.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N42_RS01800 (J4N42_01800) qstR 366581..367228 (-) 648 WP_252029279.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N42_RS01805 (J4N42_01805) ssb 367515..368063 (+) 549 WP_252029281.1 single-stranded DNA-binding protein Machinery gene
  J4N42_RS01810 (J4N42_01810) csrD 368196..370202 (+) 2007 WP_252029283.1 RNase E specificity factor CsrD -
  J4N42_RS01815 (J4N42_01815) - 370216..371655 (+) 1440 WP_252029285.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25155.96 Da        Isoelectric Point: 9.5883

>NTDB_id=548493 J4N42_RS01800 WP_252029279.1 366581..367228(-) (qstR) [Vibrio sp. SCSIO 43135]
MRKADYTRTIYFLCRDKRLDYPELNRIEEALAIALPKIEPHELMEANPRHKHKILLIDYQTHKELRQQVRNLPLQDKNYE
TIIFNVNKRLTTDELITFGNLKGLFYSYDKIVDIARGCGEIINGQNWLPRKVTSQLLHYYRHVVDSNTAPVTVDLTSREL
QILRCLQTNASNNQIAEGLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNLAS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=548493 J4N42_RS01800 WP_252029279.1 366581..367228(-) (qstR) [Vibrio sp. SCSIO 43135]
ATGAGGAAAGCAGACTACACCAGAACAATCTATTTCTTATGTAGAGACAAGAGGTTAGATTACCCTGAACTAAATCGTAT
AGAGGAAGCGCTCGCGATTGCTCTTCCCAAAATTGAACCCCATGAACTCATGGAGGCGAACCCACGCCACAAACACAAGA
TATTACTCATCGATTATCAAACCCATAAAGAACTGCGCCAGCAAGTACGTAACTTACCTTTACAGGACAAAAATTATGAG
ACCATTATCTTCAATGTGAACAAACGCCTAACAACGGACGAACTCATTACTTTTGGTAATTTGAAAGGCCTGTTTTACAG
CTACGATAAAATTGTAGATATTGCACGTGGGTGTGGGGAGATCATCAATGGTCAAAATTGGCTGCCAAGAAAAGTCACCA
GCCAACTGCTTCATTACTATCGCCACGTCGTCGACAGCAATACAGCTCCGGTCACTGTTGATTTAACCTCTAGGGAGCTG
CAAATTCTTCGCTGCTTGCAGACTAATGCATCGAACAATCAAATCGCCGAAGGGCTTTTTATCAGTGAATTTACCGTAAA
ATCCCATTTGTATCAGATTTTCAAAAAACTCTCTGTTAAAAACCGAGTACAAGCGATAGCATGGGCAAATCAAAATTTGG
CGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

61.395

100

0.614
  qstR Vibrio parahaemolyticus RIMD 2210633

60.465

100

0.605
  qstR Vibrio cholerae strain A1552

60.094

99.07

0.595