Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J4N42_RS00100 Genome accession   NZ_CP071859
Coordinates   22989..24512 (+) Length   507 a.a.
NCBI ID   WP_252028917.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17989..29512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS00085 (J4N42_00085) ilvE 19603..20553 (-) 951 WP_252028914.1 branched-chain-amino-acid transaminase -
  J4N42_RS00090 (J4N42_00090) ilvM 20565..20849 (-) 285 WP_252028915.1 acetolactate synthase 2 small subunit -
  J4N42_RS00095 (J4N42_00095) ilvG 20862..22508 (-) 1647 WP_252028916.1 acetolactate synthase 2 catalytic subunit -
  J4N42_RS00100 (J4N42_00100) comM 22989..24512 (+) 1524 WP_252028917.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J4N42_RS00105 (J4N42_00105) - 24525..25481 (-) 957 WP_252028918.1 DUF2860 domain-containing protein -
  J4N42_RS00110 (J4N42_00110) - 25692..26570 (+) 879 WP_252028919.1 acyltransferase -
  J4N42_RS00115 (J4N42_00115) - 26609..27211 (-) 603 WP_252028920.1 thiol:disulfide interchange protein DsbA/DsbL -
  J4N42_RS00120 (J4N42_00120) - 27249..28235 (-) 987 WP_252028921.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54999.05 Da        Isoelectric Point: 7.3605

>NTDB_id=548482 J4N42_RS00100 WP_252028917.1 22989..24512(+) (comM) [Vibrio sp. SCSIO 43135]
MGLAIIHSRASVGVEAPAVTVEVHISNGMPGFNLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIAIERLGDMEFVGELALSGELRKVKGVLPAALAANSAQRCLVVPHHNGDQAALVAQDSHKSAQSL
LEVCAEVCGQQSLGLHQSVTQQVSPNLQRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQQEINVHNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVQGKTRFPARFQLVGALNPSPTGYYEGNQSRINPQAILRYLGRLSGPLLDRFDMSIEIPSLPKGTLAQGGDR
GEPTQVVKHRVACARNIMWQRGGMSNALLGSREIEAYCPLQKEDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSEQ
IARPHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=548482 J4N42_RS00100 WP_252028917.1 22989..24512(+) (comM) [Vibrio sp. SCSIO 43135]
ATGGGGTTGGCGATAATTCATAGCCGTGCCAGTGTGGGAGTTGAAGCTCCTGCCGTTACAGTCGAAGTACATATTAGTAA
TGGGATGCCAGGGTTCAATTTGGTGGGCTTACCCGAAACGACGGTTAAAGAATCCAAAGATAGGGTGCGCAGTGCCATCA
TCAACTCACGATTTGAGTTTCCTTCCAAGCGAATTACAGTGAACCTAGCACCAGCAGACTTACCTAAAGAAGGCGGGCGG
TTTGACTTACCCATTGCGCTTGGCATTCTTGCTGCCTCGCAGCAAATTGCGATAGAGCGGCTGGGGGATATGGAATTTGT
CGGTGAGCTGGCTTTGTCGGGCGAATTGAGAAAAGTGAAAGGAGTACTGCCTGCGGCATTGGCGGCCAATAGTGCACAGC
GTTGTCTCGTCGTGCCGCATCATAATGGCGATCAAGCAGCATTGGTCGCACAAGACAGTCACAAATCGGCGCAAAGTCTG
TTAGAGGTATGCGCGGAAGTATGTGGGCAGCAGAGCTTGGGGCTGCACCAGAGTGTCACTCAGCAAGTTTCACCAAATTT
GCAACGCGACCTGCAAGATATCATTGGCCAACAGCAGGGTAAGCGAGCACTAGAGATAGCCGCGGCAGGAAACCATAATT
TGCTTTTCTTAGGCCCGCCCGGTACAGGAAAAACCATGCTAGCCTCTCGTCTGTGCGATTTATTGCCAGAAATGAGTGAT
GAAGAAGCAATGGAAACGGCATCGGTGGCGTCGCTGACTCAGCAGGAAATCAATGTTCACAATTGGAAGCAAAGACCATT
TCGTGCCCCTCACCACTCGAGCTCTATGGCGGCGTTAGTTGGAGGCGGCTCTATCCCAAGACCAGGGGAGATTTCGTTGG
CACATAACGGGCTGCTGTTTCTTGATGAAATGCCTGAGTTTGAGCGCAAAGTGCTGGATTCACTCCGTGAGCCTTTGGAG
TCCGGGGAAATTATCATTTCGCGAGTACAGGGCAAAACTCGTTTTCCTGCTCGGTTTCAGCTTGTGGGCGCACTCAACCC
TAGCCCGACAGGGTATTACGAAGGCAATCAGTCTCGAATCAATCCCCAAGCTATATTGCGTTATCTCGGCAGGTTATCGG
GGCCATTGCTGGATCGTTTTGACATGTCGATAGAAATCCCGTCATTACCGAAAGGGACATTGGCTCAAGGAGGCGATAGG
GGAGAGCCTACTCAAGTGGTCAAGCATAGAGTGGCGTGCGCAAGAAATATCATGTGGCAGCGCGGTGGTATGAGCAATGC
GTTGCTAGGCAGTCGAGAAATAGAAGCTTACTGTCCACTGCAAAAGGAAGACGCCGAGTTTTTGGAGAATGCGCTACATA
GGTTAGGCTTATCTATTCGGGCTTACCATCGAATAATCAAGGTAGCGCGAACCATCGCAGATTTGGAAGGCAGCGAACAG
ATAGCGAGGCCGCATTTAGCTGAAGCATTAGGCTATCGAGCGATGGATAGACTGCTTAAGCAACTTACCGCTCAAGCAGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

85.996

100

0.86
  comM Vibrio cholerae strain A1552

85.462

100

0.858
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

63.333

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428